Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0274
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ... 375 e-104
At1g10300.1 68414.m01160 GTP-binding protein-related contains si... 347 3e-96
At1g80770.1 68414.m09476 expressed protein 91 7e-19
At3g23860.1 68416.m02999 GTP-binding protein-related low similar... 75 5e-14
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 48 6e-06
At1g72660.1 68414.m08403 developmentally regulated GTP-binding p... 42 3e-04
At1g17470.1 68414.m02143 developmentally regulated GTP-binding p... 42 3e-04
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 42 3e-04
At3g10830.1 68416.m01304 hypothetical protein 39 0.004
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 37 0.015
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 36 0.027
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 34 0.082
At3g09660.1 68416.m01145 minichromosome maintenance family prote... 33 0.25
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 33 0.25
At1g30580.1 68414.m03741 expressed protein 32 0.44
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 31 0.58
At3g47450.2 68416.m05160 expressed protein 30 1.3
At3g47450.1 68416.m05159 expressed protein 30 1.3
At1g78010.1 68414.m09091 tRNA modification GTPase, putative simi... 30 1.3
At5g66470.1 68418.m08382 expressed protein 30 1.8
At4g13030.2 68417.m02034 expressed protein 30 1.8
At4g13030.1 68417.m02033 expressed protein 30 1.8
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa... 30 1.8
At4g32500.1 68417.m04626 potassium channel protein, putative sim... 29 2.3
At4g01560.1 68417.m00202 brix domain-containing protein contains... 29 2.3
At3g21700.3 68416.m02737 expressed protein 29 2.3
At3g21700.2 68416.m02735 expressed protein 29 2.3
At3g21700.1 68416.m02736 expressed protein 29 2.3
At2g41670.1 68415.m05148 GTP-binding family protein contains Pfa... 29 3.1
At4g35170.1 68417.m05000 hypothetical protein predicted protein,... 28 5.4
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein... 28 5.4
At2g22870.1 68415.m02715 expressed protein 28 5.4
>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
GTP-binding protein SP:Q99ME9 from [Mus musculus]
Length = 671
Score = 375 bits (922), Expect = e-104
Identities = 167/224 (74%), Positives = 200/224 (89%)
Frame = +1
Query: 49 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 228
M YNFK+I VVP K+F+DIILS+TQR+TPTVVHK YKI+R+R FY+RKVKYTQ NFH
Sbjct: 1 MVQYNFKRITVVPNGKEFVDIILSRTQRQTPTVVHKGYKINRLRQFYMRKVKYTQTNFHA 60
Query: 229 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 408
+LS II EFP+L+ +HPFY DL++VLY+KDHYKL LGQ+NTAR+LI ++KDYV+LLKYG
Sbjct: 61 KLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKDYVKLLKYG 120
Query: 409 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVG 588
DSLYRCK LK AALGRM T++KR +L YLEQ+RQH+ARLPSIDP TRT++ICG+PNVG
Sbjct: 121 DSLYRCKCLKVAALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVG 180
Query: 589 KSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
KSSF+NK+TRADV+VQPYAFTTKSL+VGHTDYKYLR+QVIDTPG
Sbjct: 181 KSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPG 224
>At1g10300.1 68414.m01160 GTP-binding protein-related contains
similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
from [Homo sapiens];
Length = 687
Score = 347 bits (854), Expect = 3e-96
Identities = 157/224 (70%), Positives = 192/224 (85%)
Frame = +1
Query: 49 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 228
M YNFKKI VVP K F+DI+LS+TQR+TPTVVHK +I ++R FY+RKVK+T+ NF++
Sbjct: 30 MVKYNFKKITVVPNGKQFVDIVLSRTQRQTPTVVHKGDRICKLRSFYMRKVKFTESNFNE 89
Query: 229 RLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG 408
+LS II EFP+L ++ PFY DL++VLY+KDHYKL LGQ+NTA++ I +A DYV+LLK+G
Sbjct: 90 KLSAIIDEFPRLKEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMDYVKLLKHG 149
Query: 409 DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVG 588
DSLYRCK LK AALGRM T+MK G +L YLEQVRQH+ARLPSIDP TRT++ICG PNVG
Sbjct: 150 DSLYRCKCLKVAALGRMCTVMKGIGPSLAYLEQVRQHIARLPSIDPNTRTLLICGCPNVG 209
Query: 589 KSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
KSSF+NK+TRADV VQPYAFTTKSL++GHTDYK LR+QVIDTPG
Sbjct: 210 KSSFMNKVTRADVAVQPYAFTTKSLFLGHTDYKCLRYQVIDTPG 253
>At1g80770.1 68414.m09476 expressed protein
Length = 451
Score = 91.1 bits (216), Expect = 7e-19
Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 1/220 (0%)
Frame = +1
Query: 64 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 240
F+K+ +V + D L K++R PT + K R RG +++ + L
Sbjct: 92 FQKLPMVMPSIDLYASALRKSKRVQPTKGIANIAKRERNRG--AKQLDAFMKELALPLKG 149
Query: 241 IIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLY 420
++ FP+ +HP+ L+++ Y+ LG+++ R + +V K++ L S
Sbjct: 150 YMESFPRKKLLHPYERSLIDLTLGDGKYEEVLGKVDVLRKKVQSVGKEHASLCAKALSKK 209
Query: 421 RCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSF 600
++ + ++ + ++QG + L + + L +P +D T+ + G PNVGKSS
Sbjct: 210 EAEERLSEGVEKLELVFQQQGGAVDDLLTIAKVLRAMPVVDLEMPTLCLVGAPNVGKSSL 269
Query: 601 INKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ ++ E+ Y FTT+ + +GH Y R+QV DTPG
Sbjct: 270 VRILSTGKPEICNYPFTTRGILMGHIVLNYQRFQVTDTPG 309
>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
renal failure gene protein) {Mus musculus}
Length = 230
Score = 74.9 bits (176), Expect = 5e-14
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Frame = +1
Query: 64 FKKI-AVVPTAKDFIDIILSKTQRKTPTVVHK---HYKISRIRGFYIRKVKYTQQNFHDR 231
FKKI AVVPT DF I + Q T++ H IS IR Y KV ++
Sbjct: 6 FKKISAVVPTELDFDRAIRFEYQIPNCTLIPDRVCHDDISDIRQKYAVKVMSAGTTLSNK 65
Query: 232 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYG- 408
L+ ++ EFP + + P YA L++ Y+ HY + Q++ + L++ ++ +YV LL+
Sbjct: 66 LNDVLHEFPCVRHLDPVYASLLHQRYNMYHYDRAVRQVSVTQTLVNVMSFNYVDLLRKDD 125
Query: 409 --DSLYRCKQLKRAALGRMATIMKRQGANLTYLEQVRQHLA 525
DS +C+ L AL RM T K L L+QVR+ +A
Sbjct: 126 DCDSRDKCRSLGVTALARMLTFAKSCIPALNLLDQVREFMA 166
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +1
Query: 565 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ GFP+VGKS+ +NK+T EV Y FTT + G Y+ + Q++D PG
Sbjct: 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
>At1g72660.1 68414.m08403 developmentally regulated GTP-binding
protein, putative very strong similarity to
developmentally regulated GTP binding protein (DRG1)
[Arabidopsis thaliana] GI:2345150
Length = 399
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ + GFP+VGKS+ + +T E Y FTT + G Y + Q++D PG
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPG 118
>At1g17470.1 68414.m02143 developmentally regulated GTP-binding
protein (DRG1) identical to developmentally regulated
GTP binding protein (DRG1) [Arabidopsis thaliana]
GI:2345150
Length = 399
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ + GFP+VGKS+ + +T E Y FTT + G Y + Q++D PG
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPG 118
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1
Query: 565 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ G PN GKS+ + ++RA V YAFTT +G+ +Y V D PG
Sbjct: 831 LVGMPNAGKSTLLGALSRAKPRVGHYAFTTLRPNLGNVNYDDFSMTVADIPG 882
>At3g10830.1 68416.m01304 hypothetical protein
Length = 147
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +1
Query: 64 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHY------KISRIRGFYIRKVKYTQQNFH 225
FKK++V+ T KDF+D I+S + + + + K I + V+ + F
Sbjct: 27 FKKMSVLLTEKDFVDAIVSVSLKDLTRSLFVRFEAKACPKFDLIHKTSVETVRCVGKTFM 86
Query: 226 DRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 345
LS++ +EFP + HP L+ +D H L Q+
Sbjct: 87 HMLSKVSREFPPRNRTHP--GGLLYQRFDPTHLSLARQQV 124
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 556 TIIICGFPNVGKSSFINKITRAD-VEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
T+ I G PNVGKSS IN + RA V V T+SL H D +++D PG
Sbjct: 255 TVGIIGLPNVGKSSLINSLKRAHVVNVGATPGLTRSLQEVHLDKNV---KLLDCPG 307
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 547 YTRTIIICGFPNVGKSSFINKITRAD-VEVQPYAFTTK-SLYVGHTDYKYLRWQVIDTPG 720
Y I I G PNVGKSS +N + R D V P + TT+ ++ T ++++IDT G
Sbjct: 367 YIPAIAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAG 426
Score = 29.5 bits (63), Expect = 2.3
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Frame = +1
Query: 361 LIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMATIMKRQGANLTY-LEQVRQHLARLPS 537
+++ A+D VR Y +L R +++ + T +R+G L +Q+ +HL +
Sbjct: 107 VLEKEARDIVR--DYATTLSRELKIEDETIEGKET--RRKGKRLAKNTQQIPEHLLQ--- 159
Query: 538 IDPYTRTIIICGFPNVGKSSFINKI---TRADVEVQPYAFTTKSLYVGHTDYKYLRWQVI 708
+ I G PNVGKS+ N++ RA V +P T LY G + + + V+
Sbjct: 160 ------RVAIVGRPNVGKSALFNRLVGENRAIVVDEP-GVTRDRLY-GRSYWGDQEFVVV 211
Query: 709 DTPG 720
DT G
Sbjct: 212 DTGG 215
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 34.3 bits (75), Expect = 0.082
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 565 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVI-DTPG 720
I G PN GKS+ ++ I+ A + Y FTT +G + Y V+ D PG
Sbjct: 383 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPG 435
>At3g09660.1 68416.m01145 minichromosome maintenance family protein
/ MCM family protein similar to SP|P49717 DNA
replication licensing factor MCM4 (CDC21 homolog) {Mus
musculus}; contains Pfam profile PF00493: MCM2/3/5
family
Length = 777
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Frame = +1
Query: 232 LSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLI----------DNVAK 381
LS +Q+F K+ D+ F+ +L +D+ K + +N A H + +NV K
Sbjct: 77 LSLDLQQFKKISDIENFFINL------EDNPKGVIPCMNAAVHKVLFDQWETNEFENVMK 130
Query: 382 DYVRLLKYGDSLYRCKQLKRAALGRMATI 468
VRL Y +S K L+ A +G++ T+
Sbjct: 131 INVRLHNYPESSISLKNLRAAYIGKLVTV 159
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 32.7 bits (71), Expect = 0.25
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 499 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTKS-LYVG 672
L V + ARL S D ++ G+PNVGKSS IN + +V +V P TK Y+
Sbjct: 293 LLSVLRQFARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT 351
Query: 673 HTDYKYLRWQVIDTPG 720
T +L ID PG
Sbjct: 352 LTKRIFL----IDCPG 363
>At1g30580.1 68414.m03741 expressed protein
Length = 394
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 565 ICGFPNVGKSSFINKITRADVEVQPYAFTT 654
I G PNVGKS+ N +T+ + + + F T
Sbjct: 29 IVGLPNVGKSTLFNTLTKLSIPAENFPFCT 58
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 556 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
T+++ G PNVGKS+ N+ A V P T+ + G LR+ V+D+ G
Sbjct: 119 TVMLMGRPNVGKSALYNR--EALVYNTPDDHVTRDIREGIAKLGDLRFNVLDSAG 171
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRAD-VEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
+ I G PNVGKS+ +N + + V V P A T+ +++ ++DT G
Sbjct: 315 LAIVGKPNVGKSTLLNALLEEERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAG 369
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 553 RTIIICGFPNVGKSSFINKITRADVEVQPYA 645
R + I G NVGKS+FIN + + E P A
Sbjct: 280 RDVYILGAANVGKSAFINALLKTMAERDPVA 310
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 553 RTIIICGFPNVGKSSFINKITRADVEVQPYA 645
R + I G NVGKS+FIN + + E P A
Sbjct: 280 RDVYILGAANVGKSAFINALLKTMAERDPVA 310
>At1g78010.1 68414.m09091 tRNA modification GTPase, putative similar
to tRNA modification GTPase trmE [strain PCC 7120,
Anabaena sp.] SWISS-PROT:Q8YN91
Length = 560
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRAD-VEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
I I G PNVGKSS +N ++++ V A TT+ + + + + ++DT G
Sbjct: 320 IAIVGRPNVGKSSLLNAWSKSERAIVTEVAGTTRDVVEANVTVRGVPITLLDTAG 374
>At5g66470.1 68418.m08382 expressed protein
Length = 427
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +1
Query: 457 MATIMKRQGANLTYLEQVR-QHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADVE- 630
+ ++ + N+ L+ + L P+ + + + G PNVGKS+ N++ +
Sbjct: 97 LLSLSMKPDRNMALLDDYEMEELGHTPNTHHRSGYVAVVGMPNVGKSTLSNQMIGQKISI 156
Query: 631 VQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
V TT+ +G + + DTPG
Sbjct: 157 VTDKPQTTRHRILGICSSPEYQMILYDTPG 186
>At4g13030.2 68417.m02034 expressed protein
Length = 479
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 544 PYTRTIIICGFPNVGKSSFINKITR 618
P T +I++ G GKSS +NKITR
Sbjct: 102 PKTTSIMLVGPKGAGKSSLVNKITR 126
>At4g13030.1 68417.m02033 expressed protein
Length = 481
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 544 PYTRTIIICGFPNVGKSSFINKITR 618
P T +I++ G GKSS +NKITR
Sbjct: 104 PKTTSIMLVGPKGAGKSSLVNKITR 128
>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 372
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 565 ICGFPNVGKSSFINKITRADV 627
I G+PNVGKSS IN++ + +
Sbjct: 218 IIGYPNVGKSSLINRLLKRKI 238
>At4g32500.1 68417.m04626 potassium channel protein, putative
similar to potassium channel [Solanum tuberosum]
gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 880
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 331 GLGQLNTARHLIDNVAKDYVRLLKYGDSLYRCKQLKRAALGRMAT-IMKRQGANLTYLEQ 507
G+G + AR I A +++K DSL ++ LG +AT I+ R+GA + +
Sbjct: 808 GVGGVYPARVTISGEASSSGKVVKLPDSLEELIEIGEKKLGFVATKILSREGAEIDDIRI 867
Query: 508 VR 513
+R
Sbjct: 868 IR 869
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 46 KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTP 141
K Y+ KKI T KDF +I+ T R+ P
Sbjct: 159 KRGTYDLKKIVEYATKKDFTSLIVVHTNRREP 190
>At3g21700.3 68416.m02737 expressed protein
Length = 292
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAF------TTKSLYVGHTDYKYLRWQV 705
I + G P +GK+SF+ K + EV+ T K+LY+G Y W++
Sbjct: 109 ISLLGDPEIGKTSFLAKYVGEEKEVEMRELEKGINCTDKTLYMGGARISYSIWEL 163
>At3g21700.2 68416.m02735 expressed protein
Length = 248
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAF------TTKSLYVGHTDYKYLRWQV 705
I + G P +GK+SF+ K + EV+ T K+LY+G Y W++
Sbjct: 109 ISLLGDPEIGKTSFLAKYVGEEKEVEMRELEKGINCTDKTLYMGGARISYSIWEL 163
>At3g21700.1 68416.m02736 expressed protein
Length = 291
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAF------TTKSLYVGHTDYKYLRWQV 705
I + G P +GK+SF+ K + EV+ T K+LY+G Y W++
Sbjct: 109 ISLLGDPEIGKTSFLAKYVGEEKEVEMRELEKGINCTDKTLYMGGARISYSIWEL 163
>At2g41670.1 68415.m05148 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 386
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 499 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKI 612
L+ V L + + +P T +++ G PNVGKS+ IN I
Sbjct: 120 LDLVELKLKEVIAREP-TLLVMVVGVPNVGKSALINSI 156
>At4g35170.1 68417.m05000 hypothetical protein predicted protein,
Arabidopsis thaliana
Length = 163
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +3
Query: 444 GSGSHGHHHETARS*SYIPGTGP-----STFSTFTIDRSLHQDDNH 566
G S+ HH A S SY +GP S+ +DR H+D+++
Sbjct: 48 GQVSNFQHHSVAESSSYPRSSGPLRNEYSSVQVHDLDRRTHEDEDY 93
>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
(NAC2) identical to AtNAC2 [Arabidopsis thaliana]
GI:12060426; contains Pfam PF02365: No apical meristem
(NAM) domain; similar to jasmonic acid 2 GB:AAF04915
from [Lycopersicon esculentum]
Length = 364
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 402 IWRFVVSVQTAQTCGSGSHGHHHETARS*SYIPG 503
I+R + + +G H HHH +RS ++ PG
Sbjct: 197 IFRKIPPSLSMAAASTGLHQHHHNVSRSMNFFPG 230
>At2g22870.1 68415.m02715 expressed protein
Length = 300
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 559 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPG 720
I I G NVGKSS IN + R K+ + H W ++D PG
Sbjct: 123 IAILGRSNVGKSSLINCLVRKKEVALTSKKPGKTQLINHF-LVNKSWYIVDLPG 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,145
Number of Sequences: 28952
Number of extensions: 348888
Number of successful extensions: 890
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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