Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0271
         (477 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DBFFED Cluster: UPI0000DBFFED related cluster; n...    32   5.7  
UniRef50_Q2RR35 Cluster: Putative uncharacterized protein; n=1; ...    32   7.5  

>UniRef50_UPI0000DBFFED Cluster: UPI0000DBFFED related cluster; n=2;
           Rattus norvegicus|Rep: UPI0000DBFFED UniRef100 entry -
           Rattus norvegicus
          Length = 280

 Score = 32.3 bits (70), Expect = 5.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 226 HAYYALLVSYTALKTFSSTVFSFKHLLIYLHTPFF*VYSH 107
           H  Y  + ++  + T + T++ + H+ IY HT    +Y+H
Sbjct: 180 HTQYIYIYTHIYIYTHTHTIYIYTHIYIYTHTHNIYIYTH 219


>UniRef50_Q2RR35 Cluster: Putative uncharacterized protein; n=1;
           Rhodospirillum rubrum ATCC 11170|Rep: Putative
           uncharacterized protein - Rhodospirillum rubrum (strain
           ATCC 11170 / NCIB 8255)
          Length = 512

 Score = 31.9 bits (69), Expect = 7.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 320 ATGM*ATLSPRHLALSGCTSARKSKFLSA*LPRLLCAPGIL 198
           ATG     SPR +A+ G + + KS+      P L CAPG L
Sbjct: 327 ATGYLTPGSPRMVAVGGLSGSGKSRLAREIAPHLGCAPGAL 367


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,230,072
Number of Sequences: 1657284
Number of extensions: 4104216
Number of successful extensions: 8989
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8985
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)