Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0271
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75548-4|CAA99912.1|  117|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF040642-3|AAN73872.2|  502|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    27   9.2  

>Z75548-4|CAA99912.1|  117|Caenorhabditis elegans Hypothetical
           protein R90.4 protein.
          Length = 117

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 172 CSRKFLARYKIPGAHSKRGSYAERNFDFRAL 264
           CS+KF    KIP  +  RGS AER +D   L
Sbjct: 74  CSKKFTI--KIPKDYINRGSQAERTYDIGTL 102


>AF040642-3|AAN73872.2|  502|Caenorhabditis elegans Hypothetical
           protein C50D2.7 protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 187 KTFSSTVFSFKHLLIYLHTPFF 122
           +TF  ++FS+KH L++L   FF
Sbjct: 4   ETFVPSIFSYKHRLLHLSVLFF 25


>Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical
           protein M88.4 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 296 SPRHLALSGCTSARKSKFLSA*LPRLLCAPGILYRAKNFLEH 171
           SP H+    C SA  ++ + A L  LL  P +  R+ N LEH
Sbjct: 117 SPMHVHCYRCDSAETAQIMLANLQLLLSRPDV-QRSINDLEH 157


>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 217 YALLVSYTALKTFSSTVFSFKHLLIYLHTPFF*VYSH*IHLTITIIFNSFY 65
           Y +L+SY+AL +   T+F  ++ L++     +  Y H   L I  I +S Y
Sbjct: 101 YLILISYSALGSSILTLFENRYFLMFAKHSSWRNYRH-PFLIINYIISSVY 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,507,841
Number of Sequences: 27780
Number of extensions: 96274
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)