Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0270
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    33   0.24 
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    29   5.1  

>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +3

Query: 573 YLLAIVRQRDIKSLRDLDEQHLPLLKRIRDEG----KKTILEKYQVPGSQLRIYLH 728
           ++L + R+  + SL D+ ++HLPLL+R+   G    +K + E   +  S  +++LH
Sbjct: 598 HVLVVSRKDGLDSLADVKKEHLPLLRRMHSAGVKWAQKFLEEDSSLVPSMRQLHLH 653


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 236 ENVFRERYLRKLRVFPAFDYKRCENYNNLPSH**AYCQI 352
           E+   ER +R L   PA   KRC N NNL ++   +CQI
Sbjct: 7   EDERNERIIRGLLKLPA--NKRCINCNNLTTNVATFCQI 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,649
Number of Sequences: 37544
Number of extensions: 349239
Number of successful extensions: 907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)