Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0270
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                        134   5e-32
SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)                     34   0.10 
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   31   0.97 
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)                   30   1.7  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   3.9  
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    29   5.2  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   28   9.0  

>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score =  134 bits (325), Expect = 5e-32
 Identities = 84/202 (41%), Positives = 112/202 (55%)
 Frame = +3

Query: 129 GKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKTFFENDIYGNFECFPPSTINGVK 308
           GKF+     A++L EK  F   +L      SK+T+L     ND+YG +            
Sbjct: 209 GKFQSCDDDAVVLLEKTPFSARNLPI--VLSKDTKLSVDMRNDVYGQY------------ 254

Query: 309 TTIIYPATDKHIAKFSQQEVHIVLETPELYKELTLPHLEKEQFNLQWVYNILEGKSEQDR 488
             I YPA   +  K           T  +Y   T  H+     + QWVYNILE K+E +R
Sbjct: 255 --IGYPAPTANTIK-----------TTVIYPA-TAQHIA----STQWVYNILEKKAETER 296

Query: 489 IVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIRDEG 668
           +V ++   + GFVLLPD+KWD    E LYL+AI  +R IKSLRDL+E+H+PLLK I ++G
Sbjct: 297 VVFEDGDPETGFVLLPDMKWDQQQVENLYLIAICHKRGIKSLRDLNEEHIPLLKNILNKG 356

Query: 669 KKTILEKYQVPGSQLRIYLHYQ 734
           +  I  KY VP SQLRIY+HYQ
Sbjct: 357 RDAIRTKYNVPHSQLRIYVHYQ 378


>SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)
          Length = 209

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 99  NTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSK-ETQLKTFFENDIYGNFE 275
           N  R   C V +  ++    LIL   NAF +ND  +EG+ S  E   K   E  I   + 
Sbjct: 43  NKGRMQVCTVLRSTERHCKKLILAHGNAFSKND-DDEGFISDLEMSTKLSDEKPIQKTYN 101

Query: 276 CFPPSTINGVKTTI 317
             P     GVK  I
Sbjct: 102 SIPRPLYPGVKANI 115


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 129 QPHKLFSC*CYCSIFSPKQSLSILTDCHLDCCRFH 25
           QPH    C   CS  +P  +L   T CH+DCC FH
Sbjct: 833 QPHTAAVCPQPCS--AP--TLCYHTGCHVDCCAFH 863


>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
          Length = 303

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/83 (26%), Positives = 40/83 (48%)
 Frame = +3

Query: 471 KSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLK 650
           K E   ++ ++K      +L   L+ DG   +  + L +  +RD   LR L E +    +
Sbjct: 112 KHEDTVVLAESKKNSISELLCKALQ-DGRISDEEFRLILRGKRDTTRLRPLSELYTASHR 170

Query: 651 RIRDEGKKTILEKYQVPGSQLRI 719
           R+R  G+KT++ +  V  S L +
Sbjct: 171 RLRIYGRKTVILRSVVWRSNLML 193


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 31/120 (25%), Positives = 58/120 (48%)
 Frame = +3

Query: 354  SQQEVHIVLETPELYKELTLPHLEKEQFNLQWVYNILEGKSEQDRIVHDNKSEKEGFVLL 533
            +Q  +H  ++  EL K L   H EK+   LQ  +   + K+ Q ++  + + E+  F   
Sbjct: 1111 AQANLHASVD--ELRKNLNAKH-EKQLAELQASHE-QDLKALQAKLDQEKEVERVRF--- 1163

Query: 534  PDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIRDEGKKTILEKYQVPGSQL 713
             + K   + + T  +   V ++    LR L EQH   L+ +R+E  +T +EK+    ++L
Sbjct: 1164 EEEKQRDIERLTAAMDGSVSEQQQLQLRMLQEQHERELESVREELVQTHMEKFAEMAAKL 1223


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +3

Query: 450 VYNILE---GKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRD 620
           + NIL+   GK+E+ R +   ++E E  +L  ++  DGL  +   L+A      I+    
Sbjct: 158 IKNILDEQRGKAEEVRALQ-KETESERALLKKEI--DGLYDQKRALIAAFNHEKIEYFNS 214

Query: 621 LDEQHLPLLKRIRDEGKKTILEK 689
           L E  L   +R R+E +K   EK
Sbjct: 215 LREAKLQNRQRKREESQKHTEEK 237


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 605 YVSLSDNSQ*IQRLFGKTVPLQIGEEHESFLFTLIVMYNSILLAF 471
           YV LS+     QR  G +    +GE+H+S+   L ++Y  + L F
Sbjct: 528 YVILSNPGNQSQRSLGYSHGGNVGEKHQSYKQVLFIIYCFLQLYF 572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,366,238
Number of Sequences: 59808
Number of extensions: 440915
Number of successful extensions: 1010
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)