Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0268
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34921| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_128| Best HMM Match : SH3BP5 (HMM E-Value=3.3)                      68   5e-12
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)          32   0.41 
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         30   1.7  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               29   2.2  
SB_20969| Best HMM Match : DUF164 (HMM E-Value=0.6)                    29   2.2  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  28   6.7  
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       27   8.9  
SB_39137| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_26241| Best HMM Match : B1 (HMM E-Value=2.5)                        27   8.9  

>SB_34921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score =  138 bits (334), Expect = 3e-33
 Identities = 58/129 (44%), Positives = 91/129 (70%)
 Frame = +2

Query: 146 MSWGVELWDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEE 325
           MSWGV+LWDQ+D +AAH+ +GI+ + +   F KERC IE EYA +LR+L K++  K+K E
Sbjct: 1   MSWGVDLWDQFDLVAAHSERGIDLVKRISRFAKERCRIEAEYAKELRKLAKSFHTKKKHE 60

Query: 326 DEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEGAK 505
           DE QY++ KAF  +++E  D AGQ E++AEN+ + + +ELH L  EL  E+++H ++  K
Sbjct: 61  DELQYSSHKAFSDVVKETDDKAGQHELIAENMSAEIYKELHKLHSELEHEKRKHCSDAKK 120

Query: 506 QMGVLNTSI 532
           +   ++ S+
Sbjct: 121 EQDDMDHSM 129


>SB_128| Best HMM Match : SH3BP5 (HMM E-Value=3.3)
          Length = 410

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = +2

Query: 287 RLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKEL 466
           +L KN+QPK+K E+E ++T  K F  +++E  D AGQ E++ ENL S+V++EL  L  EL
Sbjct: 2   KLAKNFQPKKKAEEELKFTFHKGFFDVVKETDDIAGQHELIVENLNSSVLKELQDLHSEL 61

Query: 467 REERKQ 484
           + +RK+
Sbjct: 62  KTDRKK 67


>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
 Frame = +2

Query: 164 LWDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQP---KRKEEDEY 334
           L +Q     A T   + FL     + K+   +E EY+  L RL   +     K K + + 
Sbjct: 25  LSEQLKGYDARTEGKVLFLADLQEYCKKMSEVETEYSKNLDRLSDRFLDRLQKFKAQRKE 84

Query: 335 QYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEGAKQMG 514
           + T    + +LL E  + A QR+  ++NL +N+      ++ + +   K+ L +     G
Sbjct: 85  RSTTMDVWHKLLVETKNRAKQRQSFSDNLANNIANRFMSMSDDYQRISKKKLRKYHTMFG 144

Query: 515 VLNTS 529
              T+
Sbjct: 145 ESKTA 149


>SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)
          Length = 808

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
 Frame = +2

Query: 218 LDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQ 397
           L K  +  KE  +I  E   KLR    N + ++  E+  Q  A K FK   ++L     Q
Sbjct: 53  LKKLQSKEKELNSIREETEQKLREA--NNESQQVSENLKQ--AHKWFKTKFEDL-----Q 103

Query: 398 REVV-AENLQSNVVRELHLLAKELREERKQHLNEGAKQMGVLNTS 529
            E+  ++ +QS + RE     K+LR E+KQ +NE  K   +L TS
Sbjct: 104 AELARSKKIQSALERENREQQKKLRLEKKQAVNETEKAKEILRTS 148


>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
 Frame = +2

Query: 146 MSWGVELWDQYDNLAAHTHKGIEFLDKYGN-FVKERCAIELEYAGKLRRLVKNYQPKRKE 322
           MSW  + W   D L+A+  K I  L++      K+    + +       L K  Q ++ +
Sbjct: 1   MSWAQDEWK--DGLSANALKNIASLEQQNERLAKDNKQKQFQIESCTAALEK--QKRQTK 56

Query: 323 EDEYQYTACKAFKQLLQE-LGDFAGQREVVAENLQSN------VVRELHLLAKELREERK 481
           E+E +Y+  K   QLL E   D    R+ +  ++QS       V  +L+ L + L  E K
Sbjct: 57  EEENKYSLLKRDNQLLSESCEDLERTRQKLLHDIQSKDGKISCVEGKLNRLKQNLEVESK 116

Query: 482 QHL 490
           +++
Sbjct: 117 RNV 119


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
 Frame = +2

Query: 176 YDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKA 355
           Y    A   K ++ LD   N  KE    + E    L+  V  Y+ +  +ED ++    KA
Sbjct: 586 YHEKIAELEKLVQSLDARPNNTKELEEYKAE-CEILQDEVAQYR-RLSDEDRHRLDEYKA 643

Query: 356 FKQLLQELGDFAG----QREVVAENLQSNVVRELHLLAKELREERKQHLNE 496
           F + LQ+  D       Q+        S++V++LH   KE  +ERK+  +E
Sbjct: 644 FAKQLQDNLDKISLEKLQQSQEHSKKISDLVKQLHSFNKEKEKERKKWKDE 694


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
 Frame = +2

Query: 215 FLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAG 394
           F+D  G+ V      ++  A K + LV +Y     E+    Y   +A  ++LQ   + A 
Sbjct: 128 FVDDQGHSVYREKIRQMCEANK-QSLVIDYNILANEQQVLAYFLPEAPTEMLQIFDEAAK 186

Query: 395 QREVVAENLQSNVVRELHL------LAKELREERKQHLNEGAKQMGVLNTSIG 535
           +  +        +  E+H+      L +ELR  R+ H+N+  +  GV+ +S G
Sbjct: 187 EVVLAMFPNYDRITTEIHVRIAELPLMEELRSLRQLHVNQLIRTGGVVTSSTG 239


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = -1

Query: 581 TPSPHVRTLAWLVPVNLSKCSKLPFVLLLRLNVAFFPLAILWRAGATLGLHLIEDFPRQL 402
           TP  H+R L  LVP    K S  P  L L +N+   P         T G+ +I+   R  
Sbjct: 76  TPLTHLRPLEILVPSKNLKVSVNPNNLSLPINITHVP-------NGTAGISVIKPVTRVQ 128

Query: 401 PVVLR 387
           P +LR
Sbjct: 129 PQILR 133


>SB_20969| Best HMM Match : DUF164 (HMM E-Value=0.6)
          Length = 478

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
 Frame = +2

Query: 170 DQYDNLAAHTHKGIEFLDKYGNFVKERCAI-ELEYAGKLRRLV-KNYQPKRKEEDEYQYT 343
           DQ D  +   H+  E L +  N +KE   + E ++   L+++  K ++ K + + E    
Sbjct: 83  DQVDEYSQQIHQLQEALAEKTNEIKESMFMTEKKHKDTLQQMEHKFFEEKVRLQQEASKK 142

Query: 344 ----ACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEGAKQM 511
               A +A  + +  L +    R V  EN++ N   E H+   E  ++ + HL E  K++
Sbjct: 143 IAELAERAHTEAISNLDETT--RSVYKENVRVNAALEFHMKEGEELKKERDHLLEDNKEL 200


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
 Frame = +2

Query: 248  RCAIELEYA-GKLRRLVKNYQPKRKEE--DEYQYTACKAFKQLLQELGDFAGQREVVAEN 418
            R    LE A GKL  L        K+   DE      ++  + L+E      +R   A+N
Sbjct: 2978 RMKARLEAADGKLMNLQDELHKTSKDRVIDEKTIKDKESENKTLKEEEQDLKRRLRQADN 3037

Query: 419  LQSNVVRELHLLAKELREERKQHLNEGAKQMGVL 520
            +Q N+ ++L  L KE  E RK++ N   +++ ++
Sbjct: 3038 VQLNLRKDLEDLQKEKEELRKENENLKKRKLSIV 3071


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 290 LVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELR 469
           L  N      +  + + T C+ FK+ LQ +    G    + ++ Q NVV    L++KE  
Sbjct: 677 LANNLNSILADLQQCEATECQQFKEYLQSV----GYDPAMLDDEQVNVVTLRRLISKEWL 732

Query: 470 EERKQH 487
           E R+++
Sbjct: 733 ENRERY 738


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 131 FAATKMSWGVELWDQYDNLAAHTHKGIEFLDKYGNFVK 244
           F+   + W +  WD + N+A H++ G+  +DK+ N  K
Sbjct: 187 FSGDPLEW-MTFWDSF-NVAVHSNPGLPDVDKFLNLGK 222


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
 Frame = +2

Query: 212  EFLDKYGNFVKERCAIELEYAGKLRRL---VKNYQPKRKEEDEYQY-----TACKAFKQL 367
            ++  K  +   E  ++E  Y   LR+    +K    K +EE E  +     T CK  K +
Sbjct: 1431 DYQKKISSLRSEMVSLEESYENILRKTKGDIKYQAEKEREEMEVHFDKRVETLCKTQKVI 1490

Query: 368  LQELGDFAGQREVVAENLQSNVVRELHLLAKELREE 475
            + E  +   Q +   +NL     RE+  L K+  ++
Sbjct: 1491 IDECQERVRQMQEDMDNLSLKHRREMDQLRKKSADD 1526


>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
 Frame = +2

Query: 311 KRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHL-----LAKELREE 475
           KR++E+E      +A KQ L++  ++  + EV+    Q +++ EL       +AK L+E+
Sbjct: 691 KRRQEEEVTKQELQAVKQELEKEKEWRKKTEVLMTK-QKSMIDELRQGIQGEIAKLLQEQ 749

Query: 476 RKQH 487
            K+H
Sbjct: 750 AKRH 753


>SB_39137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 23/117 (19%), Positives = 54/117 (46%)
 Frame = +2

Query: 161 ELWDQYDNLAAHTHKGIEFLDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEYQY 340
           E W++ D+ A    + +    K  N ++E+ A+ ++  G +  L +          ++Q 
Sbjct: 112 EEWNEQDSEAKQDFQSLRDEIKNKN-IEEKHALRIQLEGTVEDLWR----------QFQQ 160

Query: 341 TACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEGAKQM 511
           TA   +KQ L+   +   +R++  ENL++   +    +  ++R  + Q + +   Q+
Sbjct: 161 TAFLIYKQALKNYNETTEERKLAFENLKAKDEKSAKEIETQMR--KLQRIQDNISQL 215


>SB_26241| Best HMM Match : B1 (HMM E-Value=2.5)
          Length = 155

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 297 KIINQKGKKKMNTSIQHVKHLNSYCKS*AISQDNGKLS 410
           +IIN+ GK   +TS +H+     Y     I   NGK++
Sbjct: 75  RIINENGKITTSTSAKHIAVSRRYNSKDMIINGNGKIT 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,588
Number of Sequences: 59808
Number of extensions: 376368
Number of successful extensions: 1126
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)