Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0268
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64690.1 68414.m07333 expressed protein                             31   0.45 
At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.2  
At2g27285.1 68415.m03279 expressed protein weak similarity to ma...    28   5.5  
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    27   7.3  
At5g26980.1 68418.m03219 syntaxin 41 (SYP41) / TLG2a identical t...    27   7.3  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    27   9.6  
At3g02930.1 68416.m00288 expressed protein  ; expression support...    27   9.6  

>At1g64690.1 68414.m07333 expressed protein
          Length = 273

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
 Frame = +2

Query: 218 LDKYGNFVKERCAIELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAF----KQLLQELGD 385
           L K  + +KE  A EL+Y  K RR  +    K  ++ E +  A +A     K+L +EL  
Sbjct: 77  LGKAQDEIKELKA-ELDYERKARRRAELMIKKLAKDVEEERMAREAEEMQNKRLFKELSS 135

Query: 386 FAGQREVVAENLQSNVVRELHLLAKELREERKQ 484
              +   +  +L+    R++H LA+ LREER Q
Sbjct: 136 EKSEMVRMKRDLEEE--RQMHRLAEVLREERVQ 166


>At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 359 KQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEG 499
           K+++Q +GDF  + +V     +  V  E    AKEL E  K  + EG
Sbjct: 418 KKMMQVVGDFISREKVEGAVREVMVGEERRKRAKELAEMAKNAVKEG 464


>At2g27285.1 68415.m03279 expressed protein weak similarity to maebl
           (GI:20087019) [Plasmodium falciparum], chimeric
           erythrocyte-binding protein MAEBL (GI:22086284)
           [Plasmodium falciparum]
          Length = 323

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +2

Query: 284 RRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKE 463
           +R  +  +  RKE    +       K++  + G+F   R    E L++        +  +
Sbjct: 212 QRKAEKLEELRKEVTRVEKKRKSPEKEVSPDSGEFGSSRSKSLEPLEAEQAVSEKEMGSD 271

Query: 464 LREERKQHLNEGAKQM 511
             EERK  + E AK++
Sbjct: 272 GTEERKSSIKEAAKEV 287


>At5g60150.1 68418.m07540 expressed protein ; expression supported
           by MPSS
          Length = 1195

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = +1

Query: 403 SCRGKSSIKCSPRVAPARQRIARGKKATFKRRSKTNGSFEHFDRFTGTSQASVRTC 570
           S RGKS +KCSP   P   RI             T   F    R TGTS    + C
Sbjct: 28  SSRGKSYLKCSPLQIPRSSRIV-----------PTRPPFSPIGRVTGTSNNREQPC 72


>At5g26980.1 68418.m03219 syntaxin 41 (SYP41) / TLG2a identical to
           SP|O65359 Syntaxin 41 (AtSYP41) (AtTLG2a) {Arabidopsis
           thaliana}
          Length = 322

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +2

Query: 329 EYQYTACKAFKQLLQELGDFAGQREVVAENLQSNVVRELHLLAKELREERKQHLNEGAKQ 508
           E  +   K+ KQL +       +   V +N+Q ++  +L LL+ ELR+++  +L    +Q
Sbjct: 128 EITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQSTYLKRLRQQ 187


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 257 IELEYAGKLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAG 394
           IE+  A +L  L++ ++   KE   ++ +ACKAF   +++L  FAG
Sbjct: 328 IEVGSALRLSELLRLFRKVVKERPAHETSACKAF---IEQLKWFAG 370


>At3g02930.1 68416.m00288 expressed protein  ; expression supported
           by MPSS
          Length = 806

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 314 RKEEDEYQYTACKAFKQLLQELGDFAGQR-EVVAENLQSNVVRELHLLAKELREERKQHL 490
           RKE +E      +A +   + L +F  ++ EVV   +++ V R+   L KEL   + QH 
Sbjct: 121 RKEAEEASEKLDEALEAQKKSLENFEIEKFEVVEAGIEA-VQRKEEELKKELENVKNQHA 179

Query: 491 NEGA 502
           +E A
Sbjct: 180 SESA 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,431,107
Number of Sequences: 28952
Number of extensions: 255452
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)