Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0266
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203... 32 0.43
10_08_0274 + 16426892-16427101,16427193-16427572,16427655-164279... 32 0.43
09_02_0540 + 10410372-10411331 31 1.3
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 29 3.0
06_03_0636 + 22983898-22985043 29 3.0
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255 29 4.0
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 29 5.3
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220... 28 7.0
02_02_0333 + 9042393-9043610 28 7.0
>11_01_0268 -
2029007-2029464,2029521-2029615,2030815-2031077,
2031154-2031279,2031404-2032996
Length = 844
Score = 32.3 bits (70), Expect = 0.43
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = +2
Query: 167 WSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISIILKNNDCQE-ILNFSSTCKHFNELV 343
W + S T S D +++ + I SL +SI K + +LNF +C ELV
Sbjct: 514 WFNLSSQTRSID--NVYLDVGHVPITSLRKLELSIAFKERKGRHALLNFFRSCTELKELV 571
Query: 344 NTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYV 481
LW+E D + E D H DW +K +K+++
Sbjct: 572 -----LWRE-------DKVYFEEECDVHSDDWSSALKDIACLKSHL 605
>10_08_0274 +
16426892-16427101,16427193-16427572,16427655-16427927,
16428315-16428390,16428476-16428655
Length = 372
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +2
Query: 314 STCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNYVFSEL 493
ST F E T W++K++E+ +++ H G E Y+ + + S+L
Sbjct: 176 STLAPFYESDTTISAYWRDKIREMTESISYLCTRKVSHGGLANRE----SYVLD-LDSKL 230
Query: 494 KTMSPTHYCKRDDLTKQDVRDFFNV 568
K ++ Y T+ DV DFF++
Sbjct: 231 KLINVARYSTDGSTTRDDVVDFFDL 255
>09_02_0540 + 10410372-10411331
Length = 319
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 227 EELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLW 364
EE SLP++V+++IL+ +F+ TC+H+ V+ W
Sbjct: 2 EERDWSSLPSDVLAVILERLRWSSHPSFALTCRHWRSAVSPFYPAW 47
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 248 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQ 358
LP E++ +I+ N + + F + CK ++E++N +Q
Sbjct: 365 LPVELLELIVSNLSLVDRIRFPTVCKAWSEVLNPIEQ 401
>06_03_0636 + 22983898-22985043
Length = 381
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 383 LIPDAAFVVVESDCHDGD 436
+IPD VV+ SDCH GD
Sbjct: 327 VIPDGRVVVIGSDCHGGD 344
>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
Length = 863
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 4 HLIQIIDPSKAVPVQYSTFCCNCYSKNLQTFYLHKMF 114
+ + ++DPS VP+Q+S CC +LQ Y + F
Sbjct: 448 NFMTLLDPSGPVPLQHSN-CCKVRRMSLQGSYCQEKF 483
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 293 QEILNFSSTCKHFNELVNT-DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGF 460
QE+ + + + N LV+ D +L+K +L+ D + VVV DC DW + F
Sbjct: 904 QELQDATDFFSNNNVLVDLFDSKLYKGRLQ----DGSLVVVHMDCPTADWSRRTRQF 956
>08_01_0272 +
2200061-2200078,2200835-2202076,2202201-2202698,
2203316-2203345
Length = 595
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 584 MSLAYAINILQDFIKITSELADAYACKKPFTLTEMHYARILLRHLIHPFITSKWVQ 751
+S A+ + IL FI ++S A A F T H + L+HP +W Q
Sbjct: 308 LSGAFILEILSVFIVVSSFWAYFMATVSDFLCTRCHDVIFSIVKLVHPESKPQWSQ 363
>02_02_0333 + 9042393-9043610
Length = 405
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +2
Query: 248 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKE 382
LP +++ +L ++ S CK ++E+V+ +Q W + + +
Sbjct: 44 LPDDLLEKVLSFLPVASVIRSGSVCKRWHEIVHARRQTWSKMVPQ 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,817,584
Number of Sequences: 37544
Number of extensions: 323346
Number of successful extensions: 663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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