Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0266
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_35209| Best HMM Match : Ank (HMM E-Value=0)                         29   5.4  
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +2

Query: 245 SLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKE 382
           SL +EV+SIIL     + +LN S TC+ F EL      LWK+  K+
Sbjct: 18  SLSSEVLSIILSYLPAKTLLNLSETCRRFKELCFECDTLWKDLCKQ 63


>SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 242 YSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLW 364
           +SLP EV+ IILK    Q+++N      +   LV+    LW
Sbjct: 22  FSLPEEVLIIILKFLPAQDLVNIRLVSTNLKHLVDESPTLW 62


>SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 263 ISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDA 397
           + I++ ++D  E     ST  +  +   +DQ+ W +  +E IPD+
Sbjct: 58  VVIVVSSHDSSEEKRHLSTRYNLEKWPGSDQEKWTDSFQEKIPDS 102


>SB_35209| Best HMM Match : Ank (HMM E-Value=0)
          Length = 787

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 92  LFTYIRCLKCKFCSVLYNLLAVTSGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISI 271
           L  Y+R  +  FC ++YN    T+  SS  I      ++ +HI+   L+ + L  EV+ I
Sbjct: 728 LTVYLRSNEQDFCGIVYN---TTNLCSSSLIVRQDGFVKLLHIVCIVLACFHLSKEVLQI 784

Query: 272 I 274
           +
Sbjct: 785 V 785


>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 239 IYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWK 367
           I++LP E+++ I    + +++   S  CK ++     D QLWK
Sbjct: 112 IHNLPPEILNKIFSYLNPKDLCRTSQVCKSWSVFAK-DGQLWK 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,889,888
Number of Sequences: 59808
Number of extensions: 416540
Number of successful extensions: 971
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)