Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0266
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z37139-2|CAA85486.1|  384|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z70286-3|CAA94296.1|  298|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U40419-6|AAL02445.2|  408|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical pr...    28   8.2  
X69016-1|CAA48781.1|  549|Caenorhabditis elegans ced-4 protein.        28   8.2  
U21324-1|AAA62564.1|  549|Caenorhabditis elegans Cell death abno...    28   8.2  

>U40427-3|AAA81469.1|  320|Caenorhabditis elegans Hypothetical
           protein F43C9.1 protein.
          Length = 320

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 233 LSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELV 343
           +S++ LP+E++  + +N + Q+I    S C+ FN ++
Sbjct: 1   MSMHQLPSEMLRSVFQNVNSQDIPKLRSVCQMFNSVI 37


>Z37139-2|CAA85486.1|  384|Caenorhabditis elegans Hypothetical
           protein C14B1.3 protein.
          Length = 384

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 245 SLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKE 370
           ++P E  S I +  D + +LN    C  FN+L+++D   W E
Sbjct: 26  TVPNECFSPIFRRLDKKSLLNCQLACHRFNDLISSD-SFWIE 66


>Z70286-3|CAA94296.1|  298|Caenorhabditis elegans Hypothetical
           protein K08C7.7 protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 227 EELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQ 355
           E   I  LP E+I  +LKN   +E+ + + TCK  + L+  ++
Sbjct: 4   ENFPILELPPELILHVLKNYCYEELNDITVTCKTLHALIEENR 46


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 7/153 (4%)
 Frame = +2

Query: 248 LPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQ-QLWKEKLK-ELIPDAAFVVVE-S 418
           +P  V+  IL N   Q IL     CKHF + +   Q  +    +  E+ P+     +E  
Sbjct: 1   MPELVMKNILGNVGLQSILKLRLVCKHFYDCIQLLQPNIHLNSISLEISPNLLICDIELK 60

Query: 419 DCHD-GDWLEEIKGFYYIKNYVFSELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSL- 592
           +C   G    + +  Y++        +    T   K  D    + R+ FN+ +  + +L 
Sbjct: 61  ECQSIGVICRKTEDGYFLHR------RNRKLTKLIKTQDF-YTEFREVFNLLLKYQRALL 113

Query: 593 -AYAINILQD-FIKITSELADAYACKKPFTLTE 685
             ++IN   D  IKI  EL      K+ F   E
Sbjct: 114 QRFSINFESDGDIKIFEELVHILKAKRRFLQVE 146


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 691 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 584
           MH+SQ +W F C+      S+     KIL    SI ++H
Sbjct: 1   MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39


>Z50006-1|CAA90301.1|  190|Caenorhabditis elegans Hypothetical
           protein T07C5.1b protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 691 MHFSQSKWFFACICICQFTSYFY---KILKNVDSIGQTH 584
           MH+SQ +W F C+      S+     KIL    SI ++H
Sbjct: 1   MHYSQMRWMFFCLTALLHGSFIVNAAKILVYCPSISKSH 39


>U40419-6|AAL02445.2|  408|Caenorhabditis elegans Hypothetical
           protein C27F2.7 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 248 LPAEVISIILKNNDCQEILNFSSTCKHFNEL 340
           LP   I  I+   D Q +LN S TC H  +L
Sbjct: 130 LPDTDICQIMSFLDAQSLLNLSQTCSHLRQL 160


>Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical
           protein C08F8.6 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 476 YVFSELKTMSPTHYCKRDDLTKQDVRDFFNVAISTKMSLAYA-INILQDFIKITSELADA 652
           YV +ELK     H+C  +D  K  V D FN  + T + L+ A +  +    K +   A +
Sbjct: 60  YVLNELKKAGGRHFCNIED--KGQV-DNFNYVVMTFVGLSLADLRAISPTKKFSMGTAIS 116

Query: 653 YACKKPFTLTEMH 691
            A +    L +MH
Sbjct: 117 IARQSLEALEDMH 129


>X69016-1|CAA48781.1|  549|Caenorhabditis elegans ced-4 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/73 (21%), Positives = 36/73 (49%)
 Frame = +2

Query: 161 SGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNEL 340
           SG + KS      D+  +   +++L  +     V S++LK   C  +++  +T   F+++
Sbjct: 193 SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252

Query: 341 VNTDQQLWKEKLK 379
           V  +   W ++L+
Sbjct: 253 VQEETIRWAQELR 265


>U21324-1|AAA62564.1|  549|Caenorhabditis elegans Cell death
           abnormality protein4, isoform a protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/73 (21%), Positives = 36/73 (49%)
 Frame = +2

Query: 161 SGWSSKSITTTS*DLRKIHIMDEELSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNEL 340
           SG + KS      D+  +   +++L  +     V S++LK   C  +++  +T   F+++
Sbjct: 193 SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252

Query: 341 VNTDQQLWKEKLK 379
           V  +   W ++L+
Sbjct: 253 VQEETIRWAQELR 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,820
Number of Sequences: 27780
Number of extensions: 348665
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)