Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0266
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    36   0.022
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...    34   0.089
At3g08750.1 68416.m01017 F-box family protein contains F-box dom...    31   1.1  
At4g04690.1 68417.m00685 F-box family protein (FBX15) contains F...    30   1.4  
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z...    30   1.4  
At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00...    29   3.3  
At3g13820.1 68416.m01745 F-box family protein contains Pfam PF00...    29   4.4  
At3g18330.1 68416.m02332 F-box family protein contains Pfam PF00...    28   5.8  

>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 245 SLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKL 376
           SLP ++I  IL+    + +L F STCK + EL++ D++   + L
Sbjct: 4   SLPFDLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHL 47


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
            calmodulin-binding protein GI:6760428 from [Arabidopsis
            thaliana]
          Length = 1022

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 23/99 (23%), Positives = 45/99 (45%)
 Frame = +2

Query: 74   TQRICKLFTYIRCLKCKFCSVLYNLLAVTSGWSSKSITTTS*DLRKIHIMDEELSIYSLP 253
            T R   L  ++R + C     L  L ++T G++   I+    +   I  ++E L +  + 
Sbjct: 897  TDREAILKIHLRKIPCSSDICLKELASITKGYTGADISLICREAA-IAALEESLEMEEIS 955

Query: 254  AEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKE 370
               +   +   +  EIL++ +  + F  LV+TD Q  +E
Sbjct: 956  MRHLKAAISQIEPTEILSYKALSEKFQRLVHTDPQREEE 994


>At3g08750.1 68416.m01017 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 233 LSIYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPD 394
           L + SLP E+I  IL     + ++ F STCK +  L+ T+++     L    P+
Sbjct: 7   LLLPSLPFELIEEILYKIPAESLIRFKSTCKKWYNLI-TEKRFMYNHLDHYSPE 59


>At4g04690.1 68417.m00685 F-box family protein (FBX15) contains
           F-box domain PF:00646
          Length = 378

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 245 SLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLW 364
           SLP E++  ILK    + +  F STCK +  ++ + + ++
Sbjct: 10  SLPFELVEEILKKTPAESLNRFKSTCKQWYGIITSKRFMY 49


>At1g51550.1 68414.m05802 F-box family protein similar to F-box
           ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
           [Arabidopsis thaliana]
          Length = 478

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 239 IYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLWKEKL-KELIPDAAFVVVE 415
           I +LP + +  IL       IL+FS TCK +  L  +D  LW+    +E  P +   +  
Sbjct: 21  IINLPDDHLLTILLLLPVDSILSFSMTCKRYKSLACSD-SLWEALCEREWGPTSVDALKL 79

Query: 416 SDCHDG-DWL 442
           S   DG  W+
Sbjct: 80  SSLRDGFSWM 89


>At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 579

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +2

Query: 239 IYSLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQLW 364
           + SLP +VI++I +    ++I N S  CK   ++V++ +++W
Sbjct: 19  LLSLPEDVIAVIARFVSPRDICNLSLCCKSLCDVVDS-ERIW 59


>At3g13820.1 68416.m01745 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 415

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 245 SLPAEVISIILKNNDCQEILNFSSTCKHFNEL 340
           +LPAEV+  IL       +    STCK +N L
Sbjct: 6   NLPAEVLEEILSRTPVTSLRTMRSTCKKWNNL 37


>At3g18330.1 68416.m02332 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 376

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 245 SLPAEVISIILKNNDCQEILNFSSTCKHFNELVNTDQQ 358
           +LP E++  IL       +   S+TCK +N L++ D++
Sbjct: 5   NLPKELVEEILSFVPATYLKRLSATCKPWNRLIHNDKR 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,835
Number of Sequences: 28952
Number of extensions: 294404
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)