Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0261
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.7  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   3.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   4.8  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   4.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 201 NKPKRTMAYRIKLSMETTESLLKALRTLMSLR 296
           N+P    +Y +    ET E LL   RT+ S++
Sbjct: 419 NQPYSRDSYNLAGMGETIEDLLHFCRTMYSMK 450


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 56  FVKQLLLAFFI*IPQFVIMV 115
           F KQLL+ F    P FV+++
Sbjct: 146 FTKQLLIKFVEVYPLFVLLI 165


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 219 MAYRIKLSMETTESLLKAL 275
           + +R+K S E  E+LLK L
Sbjct: 407 VCFRLKASNEINEALLKRL 425


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 144 LRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKALRTLMSL 293
           ++   P   +  L+  KF+ KP   +   +   +E TE L  +  T + L
Sbjct: 203 IKTSGPHKFQPLLRLPKFKKKPLLCVVSTLSCYLERTELLRSSGETRLFL 252


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 227 SDQVEHGDD--GIAAEGAENADESTEGDQ 307
           SD+ + GDD  G +    E+ D+   GD+
Sbjct: 180 SDEQDDGDDGQGSSTNNDEDDDDEETGDR 208


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 227 SDQVEHGDD--GIAAEGAENADESTEGDQ 307
           SD+ + GDD  G +    E+ D+   GD+
Sbjct: 180 SDEQDDGDDGQGSSTNNDEDDDDEETGDR 208


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 227 SDQVEHGDD--GIAAEGAENADESTEGDQ 307
           SD+ + GDD  G +    E+ D+   GD+
Sbjct: 180 SDEQDDGDDGQGSSTNNDEDDDDEETGDR 208


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 123 FWATMMTNCGI*IKNANNN 67
           FWA         +KNANNN
Sbjct: 392 FWAQYTNKMIDRLKNANNN 410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,319
Number of Sequences: 336
Number of extensions: 1552
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)