Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0261
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.40 
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   1.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   3.7  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   3.7  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   6.5  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   8.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   8.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.6  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 84  LSKYHSSSSW*PKRKVAELKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 260
           ++K  S +   PK+   E K R  +P P K S+KKQK ++K K   +   +    ++ES
Sbjct: 40  IAKQSSKTDVSPKKSKKEAK-RASSPEPSKKSVKKQK-KSKKKEESSSESESESSSSES 96


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 153 PNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKALRTLMSLRR 299
           P P PL+  +  +  +N+P+     +++  +E  E++  + RTL   R+
Sbjct: 262 PLPVPLQSVMDSEHNENEPRALKRRKVQKLLEPDENIELSTRTLSQWRK 310


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +2

Query: 389 NLPSSYLFDYQEKLKELFSKH---GEINTVKRGPIIVT 493
           N P S L DYQ K+ E  S      E+NT++  P  V+
Sbjct: 255 NTPESLLIDYQSKIPEDLSSSLLPLELNTLQSTPTSVS 292


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 117 PKRKVAELKLRQPNPS---PLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 260
           PKR+  E+K   P P+   P+K S     ++ +P R +  R  L ++  +S
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLMLDDVQS 366


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 377 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELT 502
           L V+NL  + + + Q+ L+ELFSK G I +        TE++
Sbjct: 421 LFVKNLDDNIVGNTQQ-LEELFSKFGRIKSCTLASYPSTEIS 461


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 144 LRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLK 269
           L   NPS  +++     F+ KP +    R+K + + T  LL+
Sbjct: 27  LAAENPSKREVAQDVPGFERKPTKVRKPRVKWTEKETNDLLR 68


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = +3

Query: 81   FLSKYHSSSSW*PKRKVAELKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 260
            F      SSS   + +  ELKL Q +   LK  ++++    K   T   ++    +   +
Sbjct: 871  FRRNLSGSSSPSERSQSRELKLLQASEKRLKEQVEERNSLIKNIVTRFTQLNTGSKPVNT 930

Query: 261  LLKALRTLMSLRRAIRI 311
             ++AL T+ S+ +A+ +
Sbjct: 931  NVEALTTISSMNQAVNM 947


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 238 NLIRYAIVLFGLFWNFCFFN 179
           N  R  ++ FG+FW F  FN
Sbjct: 515 NFNRIWVIHFGMFWYFTAFN 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,164
Number of Sequences: 5004
Number of extensions: 24251
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)