Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0261
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 31 0.53
03_01_0190 - 1508948-1509622,1510783-1511054,1511152-1511305 29 1.6
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 28 3.7
10_01_0361 - 3983516-3983681,3983952-3984154 28 5.0
10_01_0298 - 3094197-3094307,3095093-3095253,3095462-3095666,309... 28 5.0
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 28 5.0
01_06_0833 + 32296957-32297256,32299257-32299895 28 5.0
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 27 6.5
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 27 8.7
02_02_0559 - 11483798-11483988,11484076-11484163,11484288-114844... 27 8.7
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 377 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 481
+ V+NLP + +EK+KE+F KHGE+ V P
Sbjct: 317 IYVKNLPENAS---KEKIKEIFEKHGEVTKVVLPP 348
>03_01_0190 - 1508948-1509622,1510783-1511054,1511152-1511305
Length = 366
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 221 GVSDQVEHGDDGIAAEGAENADESTEGDQ 307
GVS ++HGDD +AA N+DE E D+
Sbjct: 313 GVSSPLDHGDDDMAALLFLNSDERDEVDR 341
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +2
Query: 377 LLVENLPSSYLFDYQEKLKELFSKHGEINTV 469
+ V+ +P+S+ D+ + LKE+F KHG+I +V
Sbjct: 413 IFVDGIPTSW--DHAQ-LKEIFKKHGKIESV 440
>10_01_0361 - 3983516-3983681,3983952-3984154
Length = 122
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 117 PKRKVAELKLRQPNPSPLKMSL 182
P R+VA+L+L QP+P P ++ L
Sbjct: 38 PAREVADLELPQPDPVPPRLDL 59
>10_01_0298 -
3094197-3094307,3095093-3095253,3095462-3095666,
3096349-3096534,3096616-3096756,3096843-3096959,
3097046-3097456
Length = 443
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 377 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 481
+ V+NLP + +EK+KE+F HGE+ V P
Sbjct: 289 IYVKNLPENAS---KEKIKEIFEIHGEVTKVVLPP 320
>05_01_0360 +
2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 221 GVSDQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
G D E GDDG GAE +STE D+ DG
Sbjct: 125 GDDDDEEVGDDG----GAEEESQSTEDDEVAAGKDG 156
>01_06_0833 + 32296957-32297256,32299257-32299895
Length = 312
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 374 KLLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTT 505
K+ V LP S ++KLKE F+K GE+N I+V +L T
Sbjct: 125 KIFVGGLPVSAT---EKKLKEYFNKFGEVNRA----IVVIDLNT 161
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 PLKMSLKKQKFQNKPKRTMAYRIKLSMETTES-LLKALRTLMSLRRAIR 308
PLK ++ + +N+ R R LSM +TE+ LL+A++ L L + R
Sbjct: 226 PLKSTIAEWIMRNEATRVRIARTALSMASTEAMLLEAIQELKLLAKIRR 274
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 227 SDQVEHGDDGIAAEGAENADESTEGDQNQE 316
SD E DD A E ++ EG+++QE
Sbjct: 35 SDDGEDSDDSCAVSDEEEEEDEDEGEEDQE 64
>02_02_0559 -
11483798-11483988,11484076-11484163,11484288-11484405,
11484489-11484637,11484921-11484974,11485065-11485160,
11486092-11486242,11486300-11486382,11486577-11486695,
11487111-11487237
Length = 391
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 224 VSDQVEHGDDGIAAEGAENAD 286
V ++ GDDG A EGAE+ D
Sbjct: 65 VDEESPAGDDGAAGEGAEHGD 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,955,917
Number of Sequences: 37544
Number of extensions: 151556
Number of successful extensions: 467
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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