Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0261
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.41 
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                31   0.72 
SB_583| Best HMM Match : Collagen (HMM E-Value=0.0088)                 29   2.2  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_4762| Best HMM Match : tRNA-synt_1b (HMM E-Value=0.00013)           29   2.9  
SB_49232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_50981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_16366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9336| Best HMM Match : Taeniidae_ag (HMM E-Value=0.9)               28   5.1  
SB_42866| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   27   6.7  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   27   6.7  
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   8.9  

>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 75   WHFLSKYHSSSSW*PK--RKVAELKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSME 248
            W FL+  H S SW P+  + V +L++  P+P   ++ L        P   +   IK++ E
Sbjct: 3227 WVFLANCHLSLSWMPQLDKLVEQLQVEDPHPD-FRLWLSSSPHPEFPISILQVGIKMTTE 3285

Query: 249  TTESLLKALRTLMSL 293
              + L   ++ L  L
Sbjct: 3286 PPKGLKANMKRLYQL 3300


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 150  QPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKA 272
            +P P P K+S+K+Q+  + PK   +  + +++ET + +  A
Sbjct: 2141 EPEPVPRKLSVKRQQHVSPPKEEQSEEVLVTIETRQEVESA 2181


>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1357

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 DQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           D+VE GDDG   +  +  D   EGD   E  DG
Sbjct: 814 DKVE-GDDGDEGDDGDEGDNGDEGDDGDEGDDG 845



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 230 DQVEHGDDGIAAEGAENADESTEGDQNQENPD 325
           D  + GDDG   +  +  D+  EGD    + D
Sbjct: 819 DDGDEGDDGDEGDNGDEGDDGDEGDDGSTSDD 850


>SB_583| Best HMM Match : Collagen (HMM E-Value=0.0088)
          Length = 69

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 DQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           D  + GDDG   +  E+ D+  +GD   +  DG
Sbjct: 26  DDGDDGDDGDDGDDGEDDDDGEDGDDGDDGDDG 58



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 DQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           D  + GDDG   +  E+ D+  +GD   +  DG
Sbjct: 32  DDGDDGDDGEDDDDGEDGDDGDDGDDGDDGDDG 64



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 DQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           D  + GDDG   E  ++ ++  +GD   +  DG
Sbjct: 29  DDGDDGDDGDDGEDDDDGEDGDDGDDGDDGDDG 61


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 392 LPSSYLFDYQEKLKELFSKHGEINTVKRG 478
           +P S L+D + + +E++ + G +N  KRG
Sbjct: 246 IPGSVLYDAEMETREVWKRFGSLNFTKRG 274


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 377 LLVENLPSSYLFDYQE-KLKELFSKHGEINTVK 472
           L V NLP    FD +E +++ELFSKHG +  V+
Sbjct: 173 LFVSNLP----FDAKESEIEELFSKHGVVKQVR 201


>SB_4762| Best HMM Match : tRNA-synt_1b (HMM E-Value=0.00013)
          Length = 396

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 227 SDQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           SD     D+G   EG +N D+ T GD +  + DG
Sbjct: 160 SDDDRSDDNGDNDEGDDNDDDGTFGDDDDSDADG 193


>SB_49232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 248 DDGIAAEGAENADESTEGDQNQENP 322
           D+ I  EG+ + DE T G    ENP
Sbjct: 19  DNNIKTEGSSSCDELTNGQAKDENP 43


>SB_50981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 215 NNGVSDQVEHGDDGIAAEGAENADESTEGDQ-NQENPDG 328
           N+   D  + GDDG+  +G +  D    GD  + ++ DG
Sbjct: 26  NDHTCDGNDDGDDGVGDDGDDGGDNDGSGDDGDDDDADG 64


>SB_16366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 227 SDQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           +D  + GDDG   +G +N ++  + D N +  DG
Sbjct: 216 NDDDDDGDDGEDDDGDDNGEDGGDDDNNGDFEDG 249


>SB_9336| Best HMM Match : Taeniidae_ag (HMM E-Value=0.9)
          Length = 219

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 DQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           D  + GDDG   +G +  D   +GD + +  DG
Sbjct: 63  DDGDGGDDGDGGDGGDGGDGDGDGDGDGDGGDG 95


>SB_42866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 215 NNGVSDQVEHGDDGIAAEGAENADESTEGDQNQENPDG 328
           + G  D+ EH +DG   +  E+ ++  +GD+ +   DG
Sbjct: 53  DGGRGDKKEHMEDGGRRDKKEHIEDGGKGDKKEHMADG 90


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 117 PKRKVAELKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKALRTLMSLR 296
           P  K+  L+L +P+ S +         + KP++    R+K +    E        +M  R
Sbjct: 320 PPSKIQRLELPEPDKS-INSKDSLNHVEEKPRKVHKVRLKHATVPVEGKEAPQNNVMKSR 378

Query: 297 RAIRIKKILMA 329
             +RIK  ++A
Sbjct: 379 PKVRIKNCVVA 389


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 117 PK-RKVAELKLRQPNPSPLKMSLKKQKFQNKPKRT 218
           PK +K A+ K  +P+P P+K  ++  K    PK+T
Sbjct: 120 PKPKKAAQKKAVRPDPEPVKQEMEAAKPDPLPKQT 154


>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +2

Query: 215  NNGVSDQVEHGDDGIAAEGAENADESTEGDQNQENPD 325
            ++   D  + GDDG   +  ++ D+  +GD + ++ D
Sbjct: 1024 DDDTGDDDDDGDDGDDGDDGDDGDDGDDGDDDDDDDD 1060


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 174 MSLKKQKFQNKPKRTMAYRIKLSMETTESLLKAL 275
           M LKK +F N  +   + R +L+ME  + + +AL
Sbjct: 674 MKLKKHQFDNLVEEVSSVRAELAMEAAQKIDEAL 707


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,007
Number of Sequences: 59808
Number of extensions: 174920
Number of successful extensions: 778
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)