Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0261
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical p...    27   7.8  
U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical p...    27   7.8  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    27   7.8  
AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
           protein C28G1.4 protein.
          Length = 1081

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 117 PKRKVAELKLRQPNPSPLKMSLK-KQKFQNKPKRTMAY 227
           PKRK  +  +++P P P ++ ++   K +NKP  +  +
Sbjct: 78  PKRKYVKTNIKEPKPVPERVYVRGPYKKKNKPNSSAVF 115


>U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical
           protein F25B5.7d protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 KLLVENLPSSYLFDYQEKLKELFSKHGEI 460
           +L V NLP+      + +LKELFS HG+I
Sbjct: 117 RLFVGNLPNEVK---ETELKELFSPHGDI 142


>U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical
           protein F25B5.7b protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 KLLVENLPSSYLFDYQEKLKELFSKHGEI 460
           +L V NLP+      + +LKELFS HG+I
Sbjct: 117 RLFVGNLPNEVK---ETELKELFSPHGDI 142


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 KLLVENLPSSYLFDYQEKLKELFSKHGEI 460
           +L V NLP+      + +LKELFS HG+I
Sbjct: 117 RLFVGNLPNEVK---ETELKELFSPHGDI 142


>AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical
           protein T27B7.3 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 75  WHFLSKYHSSSSW*PKRKVAELKLRQPNPSPLKMSLKKQKFQ 200
           WH L K+H  S+    RK ++ K RQ       + L ++K +
Sbjct: 206 WHILMKFHKCSATVAYRKSSDEKTRQLQKVIRNVCLDREKMK 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,718,324
Number of Sequences: 27780
Number of extensions: 137105
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)