Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0261
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ...    31   0.34 
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    29   1.4  
At1g63240.1 68414.m07148 expressed protein                             29   2.4  
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ...    27   9.6  
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ...    27   9.6  
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac...    27   9.6  
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac...    27   9.6  

>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 451

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +2

Query: 377 LLVENLPSSYLFDYQEKLKELFSKHGEINTVK 472
           ++V+NLPS ++ +  E+L+++FS+ GEI  VK
Sbjct: 4   IIVKNLPSKHVTE--ERLRDVFSRKGEIADVK 33


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 377 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 481
           L V+N+P +      E+LKELF +HGE+  +   P
Sbjct: 294 LYVKNIPEN---TSTEQLKELFQRHGEVTKIVTPP 325


>At1g63240.1 68414.m07148 expressed protein
          Length = 548

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 108 SW*PKRKVAELKLRQPNPSPLKMSLK-KQKFQNKPKRTMAYRIKLSMETTES 260
           SW P  + AEL++     +P KM++     F   PK T+    + SME+ +S
Sbjct: 91  SWLPDERKAELEIGYVGGNPYKMNVNTSNDFNTNPKETVVLD-ENSMESEDS 141


>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
           protein Mei2-like protein - Arabidopsis thaliana,
           EMBL:D86122
          Length = 907

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 371 GKLLVENLPSSYLFDYQEKLKELFSKHGEINTVKR 475
           G L V NL SS      E+L  +FS +GEI  V+R
Sbjct: 295 GALWVNNLDSSIS---NEELHGIFSSYGEIREVRR 326


>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
           subunit HAP3-related contains Pfam PF00808 :
           Histone-like transcription factor (CBF/NF-Y) and
           archaeal histone; similar to polymerase epsilon p17
           subunit (DNA polymerase epsilon subunit 3) (YB-like
           protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7)  [Mus
           musculus];
          Length = 275

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 218 NGVSDQVEHGDDGIAAEGAENADESTEGDQNQENPD 325
           NG  ++ E+G+D    E  EN DE+TE + N E  D
Sbjct: 173 NGNDEEDENGND----EEDENDDENTEENGNDEEND 204


>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 138 LKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 260
           LK+  P PSP    L K K + K   T  ++ KLS++++E+
Sbjct: 392 LKIFPPLPSPSPSFLHKGKGKGKIISTDPHKRKLSVDSSEN 432


>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 138 LKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 260
           LK+  P PSP    L K K + K   T  ++ KLS++++E+
Sbjct: 392 LKIFPPLPSPSPSFLHKGKGKGKIISTDPHKRKLSVDSSEN 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,204,983
Number of Sequences: 28952
Number of extensions: 128577
Number of successful extensions: 383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)