Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0259
         (541 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4XLX3 Cluster: Putative uncharacterized protein precur...    32   7.3  
UniRef50_Q23G92 Cluster: Zinc finger, C2H2 type family protein; ...    32   9.7  

>UniRef50_A4XLX3 Cluster: Putative uncharacterized protein
           precursor; n=1; Caldicellulosiruptor saccharolyticus DSM
           8903|Rep: Putative uncharacterized protein precursor -
           Caldicellulosiruptor saccharolyticus (strain ATCC 43494
           / DSM 8903)
          Length = 187

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 18/64 (28%), Positives = 35/64 (54%)
 Frame = +2

Query: 146 TITSVRFINKYFEIKILKEFVIHFILLFKI*VLYFQFPVVLYKVKLFKYQP*FEYILMVI 325
           TI     I  +F   +LKE ++   L+F I ++ + F   L + +LFK++  F  ++ +I
Sbjct: 108 TIYKFHAIGFFFTYILLKELIV---LIFLIILILYSFTNYLIRDRLFKFEKRFNIVVGLI 164

Query: 326 ILFL 337
           ++ L
Sbjct: 165 VVLL 168


>UniRef50_Q23G92 Cluster: Zinc finger, C2H2 type family protein;
           n=1; Tetrahymena thermophila SB210|Rep: Zinc finger,
           C2H2 type family protein - Tetrahymena thermophila SB210
          Length = 273

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +3

Query: 327 FYFYNLLV*NIIQ-FNIRMVSLNLQFQRLLLS*VWIKNK--NVHSLCNQYII 473
           F + N L+ NI+Q +N+      LQ + + L  +WIK K  N+  +  QY++
Sbjct: 93  FKYINDLIQNIVQTYNVHNFQTELQRENIRLQPIWIKIKKENILQMMQQYLL 144


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,106,509
Number of Sequences: 1657284
Number of extensions: 6019087
Number of successful extensions: 8584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8581
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)