Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0259
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58764| Best HMM Match : Sex_peptide (HMM E-Value=5.7)               29   2.4  
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 28   5.6  

>SB_58764| Best HMM Match : Sex_peptide (HMM E-Value=5.7)
          Length = 418

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 207 TNSFNILISKYLFMNRTDVIVHGLHLI 127
           T+ +N LI KYLF    D   H LH++
Sbjct: 309 TDGYNGLIRKYLFSGSQDSCDHSLHIV 335


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 146 TITSVRFINKYFEIKILKEFVIH 214
           T+ ++RFI + F++KIL E ++H
Sbjct: 878 TLGNIRFIGELFKLKILTENIMH 900


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,038
Number of Sequences: 59808
Number of extensions: 176744
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)