Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0259
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.6  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 438 YF*STLKIKVIFETVNSKKPC 376
           +F  TL+ K +F TVN   PC
Sbjct: 226 FFNITLRRKTLFYTVNLIVPC 246


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 79  NNTINRFKYKYTLLIIN*MQTMHNNISTIHK 171
           NNTI+   YKY     N  + ++ NI+ I +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 79  NNTINRFKYKYTLLIIN*MQTMHNNISTIHK 171
           NNTI+   YKY     N  + ++ NI+ I +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 79  NNTINRFKYKYTLLIIN*MQTMHNNISTIHK 171
           NNTI+   YKY     N  + ++ NI+ I +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 79  NNTINRFKYKYTLLIIN*MQTMHNNISTIHK 171
           NNTI+   YKY     N  + ++ NI+ I +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 426 TLKIKVIFETVNSKKPC 376
           TL+ K +F TVN   PC
Sbjct: 231 TLRRKTLFYTVNLIIPC 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,893
Number of Sequences: 438
Number of extensions: 2049
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)