Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0256
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMP... 77 7e-15
At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMP... 77 7e-15
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i... 75 4e-14
At1g02690.2 68414.m00220 importin alpha-2 subunit, putative simi... 73 8e-14
At1g02690.1 68414.m00219 importin alpha-2 subunit, putative simi... 73 8e-14
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 70 1e-12
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 70 1e-12
At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2) sim... 62 2e-10
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi... 60 1e-09
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi... 45 3e-05
At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family pr... 39 0.002
At3g49570.1 68416.m05417 expressed protein 31 0.43
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 0.75
At3g31910.1 68416.m04037 hypothetical protein 30 1.00
At3g05760.1 68416.m00647 expressed protein 29 1.3
At5g38400.1 68418.m04642 hypothetical protein 29 1.7
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos... 29 2.3
At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box p... 28 3.0
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 28 3.0
At3g20490.1 68416.m02595 expressed protein 28 3.0
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 28 3.0
At3g49580.1 68416.m05418 expressed protein 28 4.0
At2g48120.1 68415.m06024 pale cress protein (PAC) identical to P... 28 4.0
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 4.0
At5g24660.1 68418.m02914 expressed protein 27 5.3
At3g46600.2 68416.m05059 scarecrow transcription factor family p... 27 5.3
At3g46600.1 68416.m05058 scarecrow transcription factor family p... 27 5.3
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 27 5.3
At2g13320.1 68415.m01468 expressed protein anf genefinder 27 5.3
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00... 27 5.3
At5g53800.1 68418.m06685 expressed protein 27 7.0
At5g12300.1 68418.m01446 C2 domain-containing protein contains P... 27 7.0
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 27 7.0
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 7.0
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 27 9.3
At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2... 27 9.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 9.3
At1g17870.1 68414.m02211 expressed protein contains 6 transmembr... 27 9.3
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 27 9.3
>At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 77.0 bits (181), Expect = 7e-15
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 12/122 (9%)
Frame = +3
Query: 168 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRN--------VPISYSTD 323
+A+ R ++K G D DE RRRR + VE+RKNKRE++L K+R +P+ D
Sbjct: 8 RAELRKKIYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLD 66
Query: 324 EEE----IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGI 491
+ ++K L + ++ +++P+AQL A Q RKLLS +++PPIDE+I AG+
Sbjct: 67 GPQTAAAVEKRLEGIPM---MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGV 123
Query: 492 LP 497
+P
Sbjct: 124 IP 125
>At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 77.0 bits (181), Expect = 7e-15
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 12/122 (9%)
Frame = +3
Query: 168 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRN--------VPISYSTD 323
+A+ R ++K G D DE RRRR + VE+RKNKRE++L K+R +P+ D
Sbjct: 8 RAELRKKIYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLD 66
Query: 324 EEE----IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGI 491
+ ++K L + ++ +++P+AQL A Q RKLLS +++PPIDE+I AG+
Sbjct: 67 GPQTAAAVEKRLEGIPM---MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGV 123
Query: 492 LP 497
+P
Sbjct: 124 IP 125
>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
importin alpha-2 subunit (Karyopherin alpha-2 subunit)
(KAP alpha) SP:O04294 from [Arabidopsis thaliana]
Length = 531
Score = 74.5 bits (175), Expect = 4e-14
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Frame = +3
Query: 210 DVDEMRRRRNEVTVELRKNKREETLQKRR---NVPISYSTDEEEIDKNLATTDLDELVMN 380
D +E RRRR + VE+RKNKREE LQK+R ++ +T + E D + A D L
Sbjct: 21 DAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAM 80
Query: 381 AAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 497
A +E+ +QL A RKLLS ++NPPI+E++ +G++P
Sbjct: 81 VAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVP 121
>At1g02690.2 68414.m00220 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 539
Score = 73.3 bits (172), Expect = 8e-14
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Frame = +3
Query: 210 DVDEMRRRRNEVTVELRKNKREETLQKRRNV---PISYSTDEEEIDKNLAT-TDLDELVM 377
D DE RRRR + VE+RKNKREE LQK+R P S ++ +L T T L+ +
Sbjct: 21 DADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQPGQDFSSSLPTETRLENIQQ 80
Query: 378 NAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 497
A +E+ + QL A R+LLS ++NPPI+E++ +G++P
Sbjct: 81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVP 122
>At1g02690.1 68414.m00219 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 538
Score = 73.3 bits (172), Expect = 8e-14
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Frame = +3
Query: 210 DVDEMRRRRNEVTVELRKNKREETLQKRRNV---PISYSTDEEEIDKNLAT-TDLDELVM 377
D DE RRRR + VE+RKNKREE LQK+R P S ++ +L T T L+ +
Sbjct: 21 DADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQPGQDFSSSLPTETRLENIQQ 80
Query: 378 NAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 497
A +E+ + QL A R+LLS ++NPPI+E++ +G++P
Sbjct: 81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVP 122
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 69.7 bits (163), Expect = 1e-12
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Frame = +3
Query: 210 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY-----STDEEEIDKNLATTDLDELV 374
D +E RRRR + VE+RK+KREE+L K+R + S +DK L + L ++V
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDS--LKDMV 78
Query: 375 MNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 497
+ ++P QL + Q RKLLS +++PPI+E+I+AG++P
Sbjct: 79 AGVWS-DDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 69.7 bits (163), Expect = 1e-12
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Frame = +3
Query: 210 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY-----STDEEEIDKNLATTDLDELV 374
D +E RRRR + VE+RK+KREE+L K+R + S +DK L + L ++V
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDS--LKDMV 78
Query: 375 MNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 497
+ ++P QL + Q RKLLS +++PPI+E+I+AG++P
Sbjct: 79 AGVWS-DDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118
>At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2)
similar to importin alpha 2 [Capsicum annuum]
GI:13752562; contains Pfam profiles PF01749: Importin
beta binding domain, PF00514:
Armadillo/beta-catenin-like repeat; non-consensus GG
donor splice site at exon 1 and 6; CT acceptor splice
site at exon 2
Length = 444
Score = 62.5 bits (145), Expect = 2e-10
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Frame = +3
Query: 210 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEE-----EIDKNLATTDLDEL- 371
D +E RRRR + VE+RK+KREE+LQK+R + + + + L L+ L
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQFAPLLFLLHQLLEKKLESLP 80
Query: 372 -VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 497
++ +++ QL A Q RKLLS +++PPI+E+I AG++P
Sbjct: 81 AMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVP 123
>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 519
Score = 59.7 bits (138), Expect = 1e-09
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Frame = +3
Query: 210 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAAN 389
D +E RRRR + VE+RK+KR E L K+R V + D L + D E ++ AN
Sbjct: 21 DAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVL------PPDYKLISNDPFESLLEIAN 74
Query: 390 ------AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 497
+++P QL + R +LS D++PP D +I +G++P
Sbjct: 75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116
>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
to importin alpha subunit (Karyopherin alpha subunit)
(KAP alpha) SP:O22478 from [Lycopersicon esculentum]
Length = 528
Score = 44.8 bits (101), Expect = 3e-05
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 225 RRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPE 404
RRRR + VE+RK KREE+L K+R + +S + +D+ L ++ ++ +
Sbjct: 24 RRRREDDMVEIRKAKREESLLKKRREALPHSPSADSLDQKL---------ISCIWSDERD 74
Query: 405 AQLAAVQQCRKLLSCDK-NPPIDELIAAGILP 497
+ A Q R LL + N ++E+I AG++P
Sbjct: 75 LLIEATTQIRTLLCGEMFNVRVEEVIQAGLVP 106
>At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 483
Score = 38.7 bits (86), Expect = 0.002
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Frame = +3
Query: 156 MATD-QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD-EE 329
MA D A NR K++ +V RRR+ VTV K +RE ++ +R + + D E+
Sbjct: 1 MADDGSASNRRDPIKSSVGNVAGQRRRKQAVTV--AKERRELLVRAKRLCRVGTNGDVED 58
Query: 330 EIDKNLATTDLDELVMNAANAENPEAQLAAVQ---------------QCRKLLSCDKNPP 464
+ +N D ++ ++ A +++ E +AVQ + R+LLS + PP
Sbjct: 59 ALVENEMMVDEEQPILEAQASKSVEELKSAVQYQGKGAMQKRVTALRELRRLLSKSEFPP 118
Query: 465 IDELIAAGILP 497
++ + AG +P
Sbjct: 119 VEAALRAGAIP 129
>At3g49570.1 68416.m05417 expressed protein
Length = 97
Score = 31.1 bits (67), Expect = 0.43
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 201 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 371
A ++V+E+RRR E+ E+ + K+E RR V + EE + LA +++ L
Sbjct: 11 AAEEVEELRRRNGELEREMEEMKKEMVQLWRRTVVAEEA--EERLCSQLAELEVESL 65
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 30.3 bits (65), Expect = 0.75
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = +3
Query: 99 SLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREE 278
++ L +I T C+ + Q + + KN+G VD + R+ EVT + K +E
Sbjct: 454 NVLLNLIETMCMSPQNLSIADLGQTEQALTYLKNSGFKVDWLERKLEEVT----EKKIQE 509
Query: 279 TLQKRRNVPISYSTDEEEIDKNLATTDLDELV 374
+ K R + EE D +D + L+
Sbjct: 510 HIGKSRMQGLEEDLKEELKDLKQKCSDTEALL 541
>At3g31910.1 68416.m04037 hypothetical protein
Length = 399
Score = 29.9 bits (64), Expect = 1.00
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 207 KDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAA 386
K V + ++E + +K+ +E L+KR + + S EE++K+L ++ E +AA
Sbjct: 311 KKVTDFIEEKDEEISKKKKDTLKEDLEKRSVLDVQLSNRIEEVEKDL--KEMKESKPDAA 368
Query: 387 NAENPE 404
+ N E
Sbjct: 369 TSRNDE 374
>At3g05760.1 68416.m00647 expressed protein
Length = 202
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +3
Query: 207 KDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLA 350
+D+DE R++ E EL++ +RE+ +K++ + +E E+D +A
Sbjct: 144 QDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVE---EEPEMDPEVA 188
>At5g38400.1 68418.m04642 hypothetical protein
Length = 151
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 153 KMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 332
K A AK RM+V+K + K + +R+++ + + L + K+E+T + NV + EE+
Sbjct: 35 KHARMTAKARMNVYKESMKPLPP-KRKKSLMIISLMR-KKEDTQDDQNNVTVVEKEKEEK 92
>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
phosphatidylinositol transfer-like protein, putative
similar to phosphatidylinositol transfer-like protein
III (GI:14486705) [Lotus japonicus]; contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminu
Length = 612
Score = 28.7 bits (61), Expect = 2.3
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +3
Query: 141 ASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYST 320
+S DK + K +G +V+EM + V ELR K + R ISY T
Sbjct: 370 SSCDKPSFSGIKASDTSTAESGSEVEEMASPK--VNRELRVPKLTPVCEDIRGTAISYPT 427
Query: 321 DEEEIDKNLATTDLD 365
D E D + +D
Sbjct: 428 DSSEYDSPMVDKVVD 442
>At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box
protein, S.latifolia, EMBL:SLSLM3
Length = 322
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3
Query: 165 DQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKN 344
++ ++ M KD+ +++ +R+ +K T QK+ P S S + + +KN
Sbjct: 103 EELRDAMDSMSKMLKDLKDLQNQRDCEEDVKKKGVLHGTHQKQTFNPESCSVNFDGFNKN 162
Query: 345 LATTDLDELVMNAANAE 395
DLDE+ + AE
Sbjct: 163 TEEFDLDEIFDYVSTAE 179
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 28.3 bits (60), Expect = 3.0
Identities = 23/89 (25%), Positives = 37/89 (41%)
Frame = +3
Query: 117 ITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 296
I Y ET D D+ + M A ++ E RR E K + E L++
Sbjct: 71 IIEYKSETEEDDDDDEDEDEEYMRAQLEAAEE--EERRVAQAQIEEEEKRRAEAQLEETE 128
Query: 297 NVPISYSTDEEEIDKNLATTDLDELVMNA 383
+ +EEE+ ++ A + DEL+ A
Sbjct: 129 KLLAKARLEEEEMRRSKAQLEEDELLAKA 157
>At3g20490.1 68416.m02595 expressed protein
Length = 458
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 415 ANCASGFSALAAFITSSSRSVVARFLSISSSS 320
A+ ASG S++A+ SSRS + RF + S S
Sbjct: 149 ASAASGISSVASLFQMSSRSPLRRFQLLDSDS 180
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 28.3 bits (60), Expect = 3.0
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = -3
Query: 476 ELINRRVFITREQFSALLHSSQLCFRVFCVGSVHHQLIKVGG---SEVLVDLLLIGRIAN 306
+L+ + FI +F LL + + VFC ++HH I G + +++I + N
Sbjct: 497 QLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMVII--LFN 554
Query: 305 GHI-TPFLKCFLSFVFS*LDCDFIPSPAH 222
G P L L ++ D F PS A+
Sbjct: 555 GFTEVPMLVAKLPVLYKHRDLHFYPSWAY 583
>At3g49580.1 68416.m05418 expressed protein
Length = 94
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 201 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 371
A +++DE+RRR E++ E+ + K E +R V + EE++ LA +++ L
Sbjct: 11 AAEEMDELRRRNIELSREVAEMKTEMIKLWQRTVVAEEA--EEQLCSQLAELEVESL 65
>At2g48120.1 68415.m06024 pale cress protein (PAC) identical to PAC
[Arabidopsis thaliana] gi|1483213|emb|CAA65334
Length = 313
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 216 DEMRRRRNEVTVELRKNKREETLQKRRNV 302
DE + R+ E T ELR+ +REE ++ R +
Sbjct: 61 DEWQARQREKTKELRRMQREEEEEEERKI 89
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 168 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 347
Q K R V + ++ E +RR E + KREE + KRR + EE+++ +
Sbjct: 538 QRKEREEVERKR-REEQERKRREEEARKREEERKREEEMAKRREQE-RQRKEREEVERKI 595
>At5g24660.1 68418.m02914 expressed protein
Length = 94
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 201 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 371
A +VDE+RR+ E+ + + K+ E LQ R ++ EE + LA + + L
Sbjct: 11 AASEVDELRRKNGEMEKAVEEMKK-EMLQLWRRTQVAEEA-EERLCSQLAELEAESL 65
>At3g46600.2 68416.m05059 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 453
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +3
Query: 213 VDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 392
VDE+ + EV + +KN + E +K+ + S++ + K+ D+ L+M A A
Sbjct: 31 VDELAEKFEEVLLVCQKNDQGEATEKKTR-HVKGSSNRYKQQKSDQPVDMRNLLMQCAQA 89
Query: 393 ENPEAQLAAVQQCRKL 440
Q A ++ +++
Sbjct: 90 VASFDQRRAFEKLKEI 105
>At3g46600.1 68416.m05058 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 583
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +3
Query: 213 VDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 392
VDE+ + EV + +KN + E +K+ + S++ + K+ D+ L+M A A
Sbjct: 161 VDELAEKFEEVLLVCQKNDQGEATEKKTR-HVKGSSNRYKQQKSDQPVDMRNLLMQCAQA 219
Query: 393 ENPEAQLAAVQQCRKL 440
Q A ++ +++
Sbjct: 220 VASFDQRRAFEKLKEI 235
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 189 VFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 296
+FK KD+ R +NE+ E+RK ++ TL RR
Sbjct: 923 LFKPGWKDI--FRMNQNELEAEIRKVYQDSTLDPRR 956
>At2g13320.1 68415.m01468 expressed protein anf genefinder
Length = 129
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 147 TDKMATDQAKNRMHVF---KNAGKDVDEMRRRRNEVTVELRKNKRE 275
TD++A + + + K G++ +E RRRRN++ E R+ +R+
Sbjct: 85 TDRLAAEAGEEELRRLLENKRRGREEEE-RRRRNQIEEEERRRRRK 129
>At1g01110.1 68414.m00014 expressed protein contains Prosite
PS00165: Serine/threonine dehydratases
pyridoxal-phosphate attachment site
Length = 364
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 493 SIPAAMSSSIGGFLSHESSFLHCCTAAN 410
S + S GG L +S++ CCT +N
Sbjct: 320 SFKSVAGSHFGGMLEQQSNYSSCCTESN 347
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 201 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 368
+G + ++ RRR+ RK+ R+ + +RR S S+ + E + +D +E
Sbjct: 68 SGSESEKEERRRSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESESESEYSDSEE 123
>At5g12300.1 68418.m01446 C2 domain-containing protein contains Pfam
profile PF00168: C2 domain
Length = 374
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +3
Query: 138 TASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRN-EVTVELRKNKREETLQKRRNVPISY 314
++ST +D+ KN + +++ E+ RRR+ E E +NK E ++ + Y
Sbjct: 247 SSSTTTSLSDE-KNTADSNEKENREITEVSRRRSKEGEEEEEENKMNEETTMQKQIAEMY 305
Query: 315 STDEEEIDKNLATTDLDELVMNAANAEN 398
++ ++LA L + N + E+
Sbjct: 306 MRSMQQFTESLAKMKLPMDLHNKPHEED 333
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 117 ITTYCVETASTDKMATDQAKNRMHVFKN--AGKDVDEMRRRR--NEVTVEL 257
I+T+C T D + + N++H F N + ++ + R RR NE +V L
Sbjct: 769 ISTHCTTTEEEDAIKEKKGCNQLHSFINYISERETENFRSRRRDNENSVTL 819
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = -3
Query: 236 PSPAHFIDIFACILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 72
PSP F ++F C+ +++ +F ++ + +D V Q+ + + S+K
Sbjct: 69 PSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAK 123
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 192 FKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 371
+K G ++ + +V E R+ KR + KR+ + +EEE D + + + DE
Sbjct: 639 YKKVGAEMRKADIEDKKVDKERRREKRMKQKIKRKRGAMEDEEEEEEEDHDGSGSSDDET 698
Query: 372 VMNAANAE 395
N+ A+
Sbjct: 699 GRNSKRAK 706
>At5g11210.1 68418.m01310 glutamate receptor family protein (GLR2.5)
plant glutamate receptor family, PMID:11379626
Length = 829
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = +3
Query: 279 TLQKRRNVPISYSTDEEEIDKNLATTDLDEL 371
++++ R+V +S++T +E+ ++ TDLDEL
Sbjct: 254 SVEEIRHVNMSFNTTKEDTSRDDIGTDLDEL 284
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 219 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID 338
E R R E + K K +E +KR+ I Y +EEE D
Sbjct: 485 ERREREKEKERQYEKEKEKEKERKRKK-EIRYEEEEEEDD 523
>At1g17870.1 68414.m02211 expressed protein contains 6 transmembrane
domains; similar to predicted metalloproteases
Length = 573
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +3
Query: 135 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY 314
E ++ K + +Q H + + +D D +R NE + + ++ N P S
Sbjct: 30 EFSNFGKASVNQTTRSRHSLRCSAED-DRVREPVNEAPSPVALAEEQKEDHDNNNAPPSP 88
Query: 315 STDEEEIDKNLATTDLD 365
+ EEE +K ++D
Sbjct: 89 ESSEEEEEKKSKQQEMD 105
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 153 KMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 296
K ATDQ K + + + A + +RRR E R REE QK++
Sbjct: 1098 KKATDQKKRKEYEAEKAKNEEINKKRRRE----ERRDRYREEDKQKKK 1141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,732,462
Number of Sequences: 28952
Number of extensions: 217190
Number of successful extensions: 867
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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