Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0254
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical ...    26   7.0  

>U40421-2|AAA81438.1|  453|Caenorhabditis elegans Hypothetical
           protein C02B8.5 protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 222 TSYMPPQGFLARPGGFI--NDGQRPN 293
           T + PP GF A  GG +   DGQ+P+
Sbjct: 283 TLFQPPNGFGAAGGGSVRSEDGQKPD 308


>AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical
           protein F16B4.4 protein.
          Length = 91

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 216 PVTSYMPPQGFLARPGGFINDG 281
           P   Y PP G    PGG+ N G
Sbjct: 25  PAGGYGPPSGGYGAPGGYNNQG 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,815
Number of Sequences: 27780
Number of extensions: 35832
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)