Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0253
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    31   0.038
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   4.4  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    24   4.4  
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    24   5.8  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    23   7.7  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.7  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 31.1 bits (67), Expect = 0.038
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 224 HVEQTIDNRAPRTYNTQRTDPSVSNVPS 141
           +V +  +N +P  Y+  RT+P+V+N+PS
Sbjct: 384 NVSRNSNNNSPEGYDNNRTNPTVNNLPS 411


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 221  VEQTIDNRAPRTYNTQRTDPSVSNV 147
            +E+TI+N   +  N ++TD S S+V
Sbjct: 1695 LEETIENLNKQLSNPEKTDESTSSV 1719


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 221 VEQTIDNRAPRTYNTQRTDPSVSNVPS 141
           VEQ      P  YN Q+ D +V+N PS
Sbjct: 186 VEQAALYVKPPNYNQQKWDEAVANRPS 212


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 245 IHASHTAHVEQTIDNRAPRTYNTQRTDPSVSNVPSI 138
           +++   + +E  +D+R P  +NT+  D S+  +  I
Sbjct: 105 VYSRLISELESQLDDRLPLPHNTEFLDVSLQRIERI 140


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 150 CPFDRRSSDFRAISISPLRLDNHFLAHFVSFQYH 49
           C   + S D +++ IS LR    F+ HFVSF Y+
Sbjct: 134 CQLVKDSEDVQSVEIS-LR----FVLHFVSFLYN 162



 Score = 23.4 bits (48), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 115 DFYITIKIG*PLFGTFC-IFSI-SPH*NKDISQ 23
           DFY++IK   PL G+F  +FS+ S   N D  Q
Sbjct: 241 DFYVSIKPDNPLTGSFFNLFSLRSSSNNPDSDQ 273


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 124 FSGDFYITIKIG*PLFGTFCIFSISPH*NK-DISQVFITEQS 2
           FSG  ++ +K+G PLF    + +     N  +I+Q F+  Q+
Sbjct: 308 FSGTVFMRVKVGIPLFERLKVGTNKVKNNSVNIAQSFLEPQT 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,972
Number of Sequences: 5004
Number of extensions: 22935
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)