Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0253
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1522 + 34144288-34145550                                         29   0.95 
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623...    28   1.3  
08_02_0293 - 15424397-15428041                                         26   5.1  
01_07_0022 - 40543912-40544004,40545060-40545229,40545850-405459...    26   5.1  
05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204     26   6.7  
07_03_1261 + 25266976-25267169,25267275-25268235,25268335-252684...    25   8.9  
05_04_0311 - 20120172-20122115                                         25   8.9  
05_01_0604 + 5405947-5406687                                           25   8.9  
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    25   8.9  

>04_04_1522 + 34144288-34145550
          Length = 420

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -1

Query: 284 PPPGVACPARS*LIHASHTAHVEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRFLY 105
           PP  VA  AR+     +  +   + I +  PR  + +   P+ +  PSI AP+     L 
Sbjct: 7   PPAAVAAAARA--ARPTSPSRPPKAIRSTKPRGLDEETAAPAAATFPSIKAPSAAAASLL 64

Query: 104 H 102
           H
Sbjct: 65  H 65


>01_06_1330 -
           36361275-36361448,36361778-36361973,36362248-36362325,
           36362685-36362807,36363206-36363463,36363914-36364073,
           36364702-36364812,36365159-36365429,36365514-36365663,
           36366383-36367090
          Length = 742

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 77  KKWLSNLNGDIEIAR-KSLER--RSKGHC*QKDRCVACCTCAARGCRSSVP 220
           ++++  L+ + EI R  S ER  R + HC  KD+ ++C   A +G ++ +P
Sbjct: 179 REYIPCLDNEEEIRRLPSTERGERFERHCPAKDKGLSCLVPAPKGYKAPIP 229


>08_02_0293 - 15424397-15428041
          Length = 1214

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 135 RSSDFRAISISPLRLDNHFLAHFVSFQYHHTKTRIFHKFLSRNNP 1
           R S F A+++S L L +  + H+  +++H  KT+      S + P
Sbjct: 827 RQSVFLAVTLSVLILFSLLIIHYKLWKFHKNKTKEIQAGCSESLP 871


>01_07_0022 -
           40543912-40544004,40545060-40545229,40545850-40545971,
           40549272-40550909,40553212-40553720
          Length = 843

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 176 QRTDPSVSNVPSIDAPAIFGRFLYHH*DWITTFWHILYLFNI 51
           ++  PSVSN+ ++ +  + GR   H  D    FW I  L ++
Sbjct: 650 EKLPPSVSNLVNLQSLILKGRNAGHVLDVTAAFWRITTLRHV 691


>05_06_0100 - 25576466-25576923,25577552-25577801,25577992-25578204
          Length = 306

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 89  SNLNGDIEIARKSLERRSKGHC*QKDRCVACCTCAARGCRSSVPREL 229
           S +  D E A + +   + G C    R  A     + GCRS   R L
Sbjct: 82  SRIQADAEEAMRQMRAAAAGACSCASRGAAAAAAGSGGCRSCTLRFL 128


>07_03_1261 +
           25266976-25267169,25267275-25268235,25268335-25268430,
           25269154-25269290,25269394-25269601
          Length = 531

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 166 SVRCVLYVRGARLSIVCST*AVCDACINHERAGQATPGGGN 288
           S+R +L    A   +V S   VC     HE AG+   G GN
Sbjct: 3   SIRRLLLAGAAVAVVVVSCAVVCAEASVHEYAGERFAGVGN 43


>05_04_0311 - 20120172-20122115
          Length = 647

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 59  KDTKCAKKWLSNLNGDIE--IARKSLERRSKGHC*QKDRCVACCTCAARGCR 208
           ++T+   +W + L+ +I   I   SL+   +       RC A C+   RGCR
Sbjct: 388 RNTRSTWRWRALLDAEISHNIIISSLQHSYQHLPGHLQRCFAYCSIFPRGCR 439


>05_01_0604 + 5405947-5406687
          Length = 246

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 240 RVTHSSRGTDDRQPRAAHVQHATH 169
           R+T +   T DR   AA VQH TH
Sbjct: 57  RLTWTRFNTSDRAGTAASVQHNTH 80


>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 57  QYHHTKTRIFHKFLS 13
           QY+  KTR FHK+LS
Sbjct: 400 QYNSEKTRKFHKYLS 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,453,616
Number of Sequences: 37544
Number of extensions: 152953
Number of successful extensions: 405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)