Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0253
(305 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.57
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 1.3
SB_34542| Best HMM Match : TFIIB (HMM E-Value=0.0037) 27 2.3
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 27 2.3
SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7) 27 2.3
SB_29115| Best HMM Match : OAR (HMM E-Value=2.8) 27 4.0
SB_19507| Best HMM Match : OAR (HMM E-Value=2.8) 27 4.0
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_47902| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079) 26 7.0
SB_25947| Best HMM Match : TFIIB (HMM E-Value=0.0018) 26 7.0
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) 26 7.0
SB_18694| Best HMM Match : SNF7 (HMM E-Value=0.46) 26 7.0
SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_27961| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 26 7.0
SB_17724| Best HMM Match : TFIIB (HMM E-Value=0.01) 26 7.0
SB_3872| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
>SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.5 bits (63), Expect = 0.57
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 167 RCVACCTCAARGCRSSVPRELCV 235
RC A C C GCR + RE V
Sbjct: 42 RCTAPCVCTQEGCRKTFVREAAV 64
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -3
Query: 207 RQPRAAHVQHATHRSFCQQCPFDRRSSDFRAISISPL--RLDNHFLAHF-VSFQYHHTKT 37
+Q R H Q A +S PF+ S DF + S + +L N ++ F + HH +
Sbjct: 572 KQKRPKHAQRAPMQSIQTTAPFELISLDFLHLEKSSVAEKLYNDYIMRFGFPLRIHHDQG 631
Query: 36 RIFHKFLSRN 7
+ F L ++
Sbjct: 632 KEFENDLHKH 641
>SB_34542| Best HMM Match : TFIIB (HMM E-Value=0.0037)
Length = 303
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 221 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 111
VE+T+++R+P YN PS VP ID P + F
Sbjct: 6 VERTVEDRSPPPYNI----PS-GPVPEIDVPTLMPEF 37
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 201 PRAAHVQHA-THRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHF 67
P A QHA +H++ Q PF + +D + + + +R DN HF
Sbjct: 913 PNMAGSQHALSHKT--PQAPFQKSVTDSQQVFMVTIRKDNSIEVHF 956
>SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)
Length = 286
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 201 PRAAHVQHA-THRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHF 67
P A QHA +H++ Q PF + +D + + + +R DN HF
Sbjct: 105 PNMAGSQHALSHKT--PQAPFQKSVTDSQQVFMVTIRKDNSIEVHF 148
>SB_29115| Best HMM Match : OAR (HMM E-Value=2.8)
Length = 291
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 187 VRGARLSIVCST*AVCDACINHERAGQATPGGG 285
V+ RL +C T AV D + H R G G G
Sbjct: 155 VQSFRLQKICDTQAVLDNEMTHHRQGSLGSGAG 187
>SB_19507| Best HMM Match : OAR (HMM E-Value=2.8)
Length = 174
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 187 VRGARLSIVCST*AVCDACINHERAGQATPGGG 285
V+ RL +C T AV D + H R G G G
Sbjct: 38 VQSFRLQKICDTQAVLDNEMTHHRQGSLGSGAG 70
>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 130 GASIEGTLLTEGSVRCVL--YVRG-ARLSIVCST*AVCDACINHERA 261
G S+E TL+ G +RC + G L + C+ V +AC+ RA
Sbjct: 662 GCSVEATLVQTGVLRCFCPPHEPGLVTLQVACNGFIVSNACVFEYRA 708
>SB_47902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 221 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 111
VE+T+++R+P YN P VP ID P + F
Sbjct: 179 VERTVEDRSPPPYNI----PG-GPVPEIDVPTLMPEF 210
>SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079)
Length = 472
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 266 CPARS*LIHASHTAHVEQTIDNRAPRTYNTQRTDPSVSNVPSIDAP-AIFGRFL 108
C AR + VE+T+++R+P YN NVP++ A+F R L
Sbjct: 208 CFARHEQFNKMEERTVERTVEDRSPPPYNIPGGPMPEINVPTLMPEFALFDRAL 261
>SB_25947| Best HMM Match : TFIIB (HMM E-Value=0.0018)
Length = 581
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 221 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 111
VE+T+++R+P YN P VP ID P + F
Sbjct: 279 VERTVEDRSPPPYNI----PG-GPVPEIDVPTLMPEF 310
>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
Length = 602
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 231 HSSRGTDDRQPRAAHVQHATH 169
+ RG+D PR H QH +H
Sbjct: 573 NKDRGSDSLDPRVNHHQHTSH 593
>SB_18694| Best HMM Match : SNF7 (HMM E-Value=0.46)
Length = 238
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 164 DRCVACCTCAARGCRSSVPRELCVTRVSIMNELDRLRQEAETLKNAI 304
D C C C + C+S + VT I +E ++ R +E K +
Sbjct: 32 DNCAKACECGSENCKSYT--DFMVTETGIASE-EKRRSVSEDQKKEL 75
>SB_14238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 186 VQHATHRSFCQQCP--FD-RRSSDFRAISISPLRL 91
++H + CQQCP +D ++S D R SI P L
Sbjct: 686 IKHTHTGNMCQQCPTTYDSQQSDDVRRRSIRPYDL 720
>SB_27961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 221 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 111
VE+T+++R+P YN P VP ID P + F
Sbjct: 89 VERTVEDRSPPPYNI----PG-GPVPEIDVPTLMPEF 120
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 212 TIDNRAPRTYNTQRTDPSVSNVPSID 135
T+D + +N R PS+SN S+D
Sbjct: 616 TLDEAVKKQHNVVRGSPSISNKNSVD 641
>SB_17724| Best HMM Match : TFIIB (HMM E-Value=0.01)
Length = 308
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 221 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 111
VE+T+++R+P YN P VP ID P + F
Sbjct: 6 VERTVEDRSPPPYNI----PG-GPVPEIDVPTLMPEF 37
>SB_3872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 221 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 111
VE+T+++R+P YN P VP ID P + F
Sbjct: 6 VERTVEDRSPPPYNI----PG-GPVPEIDVPTLMPEF 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,934,811
Number of Sequences: 59808
Number of extensions: 187579
Number of successful extensions: 711
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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