Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0253
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    30   0.37 
Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical pr...    29   0.64 
X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.    29   0.64 
AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeri...    29   0.64 
Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.     27   3.4  
U00050-13|AAA50694.2|  298|Caenorhabditis elegans Hypothetical p...    26   4.5  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    26   6.0  
AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 11/46 (23%), Positives = 30/46 (65%)
 Frame = -2

Query: 151 MSLRSTLQRFSGDFYITIKIG*PLFGTFCIFSISPH*NKDISQVFI 14
           ++++S++ ++   F + I +   +FGT C+ S++ + N+++S+  I
Sbjct: 142 LNIQSSVHKYLPHFTLCIILKDAVFGTACVLSLAKYLNEEVSEFCI 187


>Z49127-9|CAA88948.1|  340|Caenorhabditis elegans Hypothetical
           protein F13D12.7 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 251 MNELDRLRQEAETLKNAI 304
           M+ELD+LRQEAE LK+ I
Sbjct: 1   MSELDQLRQEAEQLKSQI 18


>X17497-1|CAA35532.1|  340|Caenorhabditis elegans G-protein protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 251 MNELDRLRQEAETLKNAI 304
           M+ELD+LRQEAE LK+ I
Sbjct: 1   MSELDQLRQEAEQLKSQI 18


>AF291846-1|AAK55963.1|  340|Caenorhabditis elegans heterotrimeric G
           protein beta subunit1 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 251 MNELDRLRQEAETLKNAI 304
           M+ELD+LRQEAE LK+ I
Sbjct: 1   MSELDQLRQEAEQLKSQI 18


>Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical
           protein F57B7.4 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 77  KKWLSNLNGDIEIARKSLERRSKGHC*QKDRCVACC-TCAARG 202
           KKW+   + + +   K    + K +C  KD    CC TCA +G
Sbjct: 464 KKWMDCKDINSKTCSKYSTSKLKHYCKSKDFREICCRTCAKKG 506


>AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 77  KKWLSNLNGDIEIARKSLERRSKGHC*QKDRCVACC-TCAARG 202
           KKW+   + + +   K    + K +C  KD    CC TCA +G
Sbjct: 464 KKWMDCKDINSKTCSKYSTSKLKHYCKSKDFREICCRTCAKKG 506


>U00050-13|AAA50694.2|  298|Caenorhabditis elegans Hypothetical
           protein F09F7.1 protein.
          Length = 298

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 173 VACCTCAARGCRSSVPRELCVTRVSIMNELDRLR 274
           + CC CA R C +   RE    R S+   +D LR
Sbjct: 236 ITCCVCAFRCCGNVKTRE---RRKSVERAMDNLR 266


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 230 TAHVEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 111
           T+H   T  N   + +   +  P   N  + D   +FG+F
Sbjct: 714 TSHSHTTFKNYNKKNFENSKISPKRGNSKAADTLLVFGKF 753


>AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical
           protein F08F1.3 protein.
          Length = 226

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -3

Query: 207 RQPRAAHVQHATHRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHFVSFQYHHTKTRIF 28
           R P   H   +T ++F ++    + S   + +  S + L   F+A FV+F + H      
Sbjct: 105 RFPSGLHFS-STGKTFARRRRMSKSSEKLKTVHNSLIFLIVIFIAKFVNFSFKHVVFSSN 163

Query: 27  HKFL 16
            KFL
Sbjct: 164 IKFL 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,248,540
Number of Sequences: 27780
Number of extensions: 136665
Number of successful extensions: 401
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)