Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0253
         (305 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein ...    27   2.5  
At2g07674.1 68415.m00900 expressed protein                             27   2.5  
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    27   3.3  
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    26   4.3  
At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ...    26   4.3  
At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    26   5.7  
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c...    26   5.7  
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c...    26   5.7  

>At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 706

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 134 RRSKGHC*QKDRCVACCTCAARGCRSSVPRELCVTRVSIMN 256
           R+   HC   D+CV C     +   + V R+  VT VS+M+
Sbjct: 182 RKFSKHCRSCDKCVDCFDHHCKWLNNCVGRKNYVTFVSLMS 222


>At2g07674.1 68415.m00900 expressed protein
          Length = 251

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 236 SHTAHVEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAI 123
           S T   E +++  +P    T+  +PSV+ VP    PA+
Sbjct: 72  SRTEEGEPSVNQGSPLPSQTEEGEPSVNQVPQEAGPAL 109


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 175 CVLYVRGARLSIVCST*AVCDACINH 252
           C L  +  +L  +C + AVC+ C+ H
Sbjct: 71  CYLCKKTPKLCCLCCSHAVCEGCVTH 96


>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 134 RRSKGHC*QKDRCVACCTCAARGCRSSVPRELCVTRVSIM 253
           R+   HC   D+CV C     R   + V R+  +T +S+M
Sbjct: 184 RKFSKHCRSCDKCVDCFDHHCRWLNNCVGRKNYMTFISLM 223


>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 462

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 166 SVRCVLYVRGARLSIVCST*AVCDAC--INHERAGQATPGGGN 288
           ++ C L  RG+  S +CS   VC  C  I H   G++  GG N
Sbjct: 311 TLTCSLGARGS--SSLCSNLPVCGVCTVIRHGFQGKSGGGGAN 351


>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = -1

Query: 287 FPPPGVACPARS*LIHASHTAHVEQTIDNRAPRTYNTQRTDPSVSNVP 144
           FPPP VA PA         T H  +      PR     RT  SV N P
Sbjct: 36  FPPPLVAMPALHPTFPLPETGHKLRPAAT-PPREKPQHRTTRSVENPP 82


>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 586

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 240 RVTHSSRGTDDRQPRAAHVQHATHRSFCQQCPFDRRSSDFRAISISPL 97
           R +H+S+GT D   R+ H   +T  +          SS+ +A S SP+
Sbjct: 360 RPSHTSKGTWDSNRRSEHRNSSTSSAPAATTTTTEMSSESKAGSNSPV 407


>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
           contains Pfam profiles: PF01909 nucleotidyltransferase
           domain,  PF04926 poly(A) polymerase predicted RNA
           binding domain
          Length = 713

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 240 RVTHSSRGTDDRQPRAAHVQHATHRSFCQQCPFDRRSSDFRAISISPL 97
           R +H+S+GT D   R+ H   +T  +          SS+ +A S SP+
Sbjct: 487 RPSHTSKGTWDSNRRSEHRNSSTSSAPAATTTTTEMSSESKAGSNSPV 534


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,705,863
Number of Sequences: 28952
Number of extensions: 119524
Number of successful extensions: 296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)