Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0251
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.3  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   5.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 144 SVSACDKETAEGGAPRAKREIPY*C 218
           S  +CD +  +G  PR + E+   C
Sbjct: 167 SADSCDSKKKKGPTPRQQEELCLVC 191


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 489 YMPVALGSLGGEGEYRDYGHHLSP 560
           Y+P +L     E +Y+D  H ++P
Sbjct: 463 YVPKSLRGRKDEADYKDKLHKVAP 486


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 83  PINTL*NNKLVDGGEKKKIK-SSDVL 9
           PI  L   K + GGEKK++  +++VL
Sbjct: 210 PIGILGRIKGISGGEKKRLSFAAEVL 235


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 83  PINTL*NNKLVDGGEKKKIK-SSDVL 9
           PI  L   K + GGEKK++  +++VL
Sbjct: 210 PIGILGRIKGISGGEKKRLSFAAEVL 235


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 120 ATHTRTTPKHNKTDKYVVKQ 61
           +T TRTT K+N+   Y +++
Sbjct: 253 STCTRTTLKNNRASPYPMQR 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,779
Number of Sequences: 336
Number of extensions: 2063
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)