Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0251
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    31   0.16 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   3.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   6.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   7.9  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   7.9  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   7.9  

>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = +1

Query: 49  STNLLFYNVFIGLIVLRSCASVRGVALFVLLSVYLLVIRKLPKAARLAPNVRSPIDVFFF 228
           S +L+     IG +V+   + + G  +  L+++ + ++ ++P A  LAPN+   + V FF
Sbjct: 142 SCSLMVVGFGIGPLVISPLSEMIGRRIVYLVTLMIYIVLQIPCA--LAPNIACLLIVRFF 199

Query: 229 C 231
           C
Sbjct: 200 C 200


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 435 NRNSFPRNFHAYYALLV-SYTALK 367
           ++N F RN+H +Y LL  + TALK
Sbjct: 260 HQNEFERNYHVFYQLLSGADTALK 283


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 456 ESARWRGDKVAYMPVALGSLGGEGEYRDYGHHLSPDHTP 572
           E AR   +K+  +  A G+   EGE  D    +S  +TP
Sbjct: 455 ERARNDAEKIRQLEKASGNASDEGELNDEEEVISSSNTP 493


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 61   LFYNVFIGLIVLRSCASVRGV--ALFVLLSVYLLVIRKLPKAARLAP 195
            L YN  + L  + S   V GV    FVLLSV +L+ + LP   R  P
Sbjct: 1095 LDYNYKVLLQPINSVYVVAGVWPVSFVLLSVCILLYKGLPPFYRQKP 1141


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 414 NFHAYY-ALLVSYTALKTFSSTVFSFKHLLIYLHT 313
           +F+ Y+ A+  +YT  +     ++S K  L++LH+
Sbjct: 532 SFYDYFKAIYTTYTDFEDLDHRLYSIKKCLLHLHS 566


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 161 ITSRYTDNSTNNATPRTLAQLRSTIRPI 78
           + SR++ N++   TPR L +  S++ P+
Sbjct: 377 LKSRFSANASKTNTPRPLERTPSSVSPV 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,098
Number of Sequences: 5004
Number of extensions: 32630
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)