Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0251
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0714 - 6312718-6313095                                           31   0.87 
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612...    28   4.6  
11_01_0530 - 4164590-4165264,4165378-4165467,4167482-4168011,416...    28   6.1  
04_03_0801 - 19828175-19828770,19828913-19828994                       27   8.1  

>08_01_0714 - 6312718-6313095
          Length = 125

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 453 PESARWRGDKVAYMPVALGSLGGEGEYR 536
           P + R+ GD+V   P ALGS G  G+ R
Sbjct: 44  PTAGRYVGDRVGLQPAALGSSGSNGKGR 71


>03_05_0435 -
           24259864-24260206,24260302-24260467,24261175-24261241,
           24261553-24261648,24261718-24261898,24262252-24262323,
           24262393-24262505,24262596-24262817,24263262-24263910,
           24264118-24264206,24265932-24266015,24266219-24266358,
           24266522-24266573
          Length = 757

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 81  RSYCASELCECAWRGIVCAV 140
           RSYC  + CEC   G+ C++
Sbjct: 554 RSYCVKKYCECFQSGVGCSM 573


>11_01_0530 -
           4164590-4165264,4165378-4165467,4167482-4168011,
           4168094-4168603,4172207-4172432
          Length = 676

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 205 ISRLARGAPPSAVSLSQADTLITAQTMPRHAHSH 104
           +S + R APPS   L  +D L       R  H H
Sbjct: 282 VSAIVRAAPPSTAFLKDSDGLSAIHVAARMGHHH 315


>04_03_0801 - 19828175-19828770,19828913-19828994
          Length = 225

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 84  SYCASELCECAWRGIVCAVI 143
           S+CA EL  C WR   C +I
Sbjct: 47  SFCAEELRTCIWRKAGCKII 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,295
Number of Sequences: 37544
Number of extensions: 208922
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)