Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0251
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   2.9  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 506 QRHRHVGHFVTAPSSAFGM 450
           +RH+H+   VTA   A+G+
Sbjct: 108 ERHKHIVRLVTAIGDAYGV 126


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 55  NLLFYNVFIGLIVLRSCASVRGVALFVLLSVYLLVIRKLPKA 180
           NLL  N ++    +   A    + L V+ +VY ++ RK+P+A
Sbjct: 804 NLLVCNSYVDASYM--IAFAYPIMLIVVCTVYAVLTRKIPEA 843


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 357 SRKFLARYKIPGAHSKRGSYAERNFDFRALVHPESARWRGDK 482
           +RKF A     G+  KR S  ER       V   SAR R  +
Sbjct: 91  NRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQE 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,281
Number of Sequences: 438
Number of extensions: 2170
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)