Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0251
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6) M...    29   1.7  
At3g05650.1 68416.m00629 disease resistance family protein conta...    28   5.1  

>At1g33350.1 68414.m04127 pentatricopeptide (PPR) repeat-containing
           protein contains multiple Pfam domains: PF01535: PPR
           repeat
          Length = 538

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 435 NRNSFPRNFHAYYALLVSYTA-LKTFSSTVFSFKHLLIYLHTP 310
           +R SFP N H Y A+L +Y++ L   +S+ FSF  L++    P
Sbjct: 81  DRFSFP-NTHLYAAVLTAYSSSLPLHASSAFSFFRLMVNRSVP 122


>At5g11800.1 68418.m01377 K+ efflux antiporter, putative (KEA6)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           glutathione-regulated potassium-efflux system protein
           KEFB, Escherichia coli, SWISSPROT:P45522
          Length = 597

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +1

Query: 7   ANTSELLIFFFSPPSTNLLFYNVFIGLIVLRSCASVRGVALFVLLSV 147
           ++T+ +L F     STN L   V IG+++L+ CA   G+ LF LL V
Sbjct: 297 SSTAVVLKFLMEKNSTNSLHGQVTIGILILQDCAV--GL-LFALLPV 340


>At3g05650.1 68416.m00629 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4A protein
           [Lycopersicon esculentum] gi|3097197|emb|CAA73187
          Length = 868

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 164 LITSRYTDNSTNNATPRTLAQLRSTIRPINTL*NNKLVDGGEKKKIKS 21
           LIT   +DN+ N + P  +  L+ST+  +N L  N+L  G  +   KS
Sbjct: 492 LITLDLSDNNLNGSIPPCMGNLKSTLSFLN-LRQNRLGGGLPRSIFKS 538


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,884,436
Number of Sequences: 28952
Number of extensions: 169308
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)