Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0250
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    25   0.58 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   2.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.2  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   9.5  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 58  VFVSELWCILMKMWSDFQFLAERTSDALRIRKR 156
           + +S+ W  +MK WS  +        ++ ++KR
Sbjct: 133 IIISKHWVTIMKEWSFMEMSMRNYGSSINMKKR 165


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -1

Query: 339 SSQRATLPPPSHGEPARLLAPQPPPEPLVNDVGA 238
           ++++A    P  G P  +++P PP + +   +G+
Sbjct: 303 AAKKAAGASPYSGTPTPMMSPAPPQDSMGYSMGS 336


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 SGENERRAAHQKKNFTTRLERAYGAAT 197
           SG+  + AA   +NF++ LE A G  T
Sbjct: 265 SGQVMKYAALATENFSSLLEPAVGTMT 291


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 38  CDRERVMFSCRNYGVSS*KCGVIFS 112
           C  ++   +C N  ++   CG IFS
Sbjct: 31  CSSQKGQKTCLNLSINYCICGYIFS 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,288
Number of Sequences: 336
Number of extensions: 1887
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)