Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0250
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.84 
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    26   4.5  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 318 PPPSHGEPARLLAPQPPPEPLVNDVGARRCRSAP 217
           PPP  G       P PPP P V+  G+R    AP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 288 LLAPQPPPEPLVNDVGARRCRSAPLERGFATLPLR 184
           +L+ Q   +PL   VG ++C  A LE G   + +R
Sbjct: 113 VLSSQEYAQPLYRSVGFKKCSDAYLEDGIPHVEMR 147


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +2

Query: 137 RCASEKELYDKIRKSVRSGNVA---KPRSKGAERQRRAPTSFTKGSGGGCGAKRRAGSPC 307
           R    +E  +K +  V +  +A   KP S  A   R AP S       G  A  R+G PC
Sbjct: 58  RAMKRREKAEKEKLGVVNDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGKPC 117

Query: 308 EGGGKVARWEDSIARLEAVA 367
                  RWE     + +++
Sbjct: 118 R------RWEKKPISIRSIS 131


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -1

Query: 345  MESSQRATLPP--PSHGEPARLLAPQPPPEPL 256
            M  +   + PP  P    P ++ AP PPP P+
Sbjct: 1681 MAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPM 1712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,398
Number of Sequences: 5004
Number of extensions: 30419
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)