Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0250
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 30   2.0  
SB_35620| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 29   4.7  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)                       28   8.2  
SB_19172| Best HMM Match : GRP (HMM E-Value=4.9)                       28   8.2  
SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9)                   28   8.2  

>SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 318 PPPSHGEPARLLAPQPPPEPLVNDVGARRCRSAPLERGFATLPLRT 181
           PPPS   P   +   PPP P  +DV     + A L+ GF+  P  T
Sbjct: 197 PPPSGAPPPPPIGAPPPPPP-DDDVSMTPVKDAKLKYGFSFKPRLT 241


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 327 ATLPPPSHGEPARLLAPQPPPEPLVNDVGA 238
           A+ PPPS G P     P PPP P + ++ A
Sbjct: 186 ASPPPPSGGPPPPPPPPPPPPPPPILELAA 215


>SB_35620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
 Frame = +2

Query: 176 KSVRSGNVAKPR-SKGAERQRRAPT--SFTK-------GSGGGCGAKRRAGSPC 307
           + VR G  A P+  +G +R+R+ PT  SFT        G GGG G   R  S C
Sbjct: 31  EGVRKGQEANPQPPRGRKRKRKRPTSVSFTNQGCVHGGGGGGGGGGGGRGCSTC 84


>SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +2

Query: 140 CASEKELYDKIRKSVRSGNVAKPRS-KGAERQRRAPTSFT----KGSGGGCGAKR-RAGS 301
           C+S      +  +S   G  A P   +G +R+R+ PT+ T    +GS  G G  R   G 
Sbjct: 102 CSSMDTSQYEEEESASEGQEANPHPPRGRKRKRKRPTASTATTKQGSVRGRGGGRGGGGG 161

Query: 302 PCEGGG 319
            C GGG
Sbjct: 162 GCGGGG 167


>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 345 MESSQRATLPPPSHGEPARLLAPQPPPEP 259
           +E++  AT  PP   E A    P PPPEP
Sbjct: 11  VETTAGATTAPPVLTEAATTQPPAPPPEP 39


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 339  SSQRATLPPPSHGEPARLLAPQPPPEPL 256
            S+ R T PPP+   P  + A Q PP PL
Sbjct: 945  STTRPTPPPPTSALPPPIPATQVPPPPL 972


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 119 RRERATRCASEKELYDKIRKSVRSGNVAKPRSKGAERQR 235
           RRER  R   EKE +DK  +  R  +  +PR    ER R
Sbjct: 834 RREREDRERREKEEFDKRDRERREKDDRRPREDDRERVR 872


>SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 342 ESSQRATLPPPSHGEPARLLAPQPPPEP 259
           E+ +R T  PP    PA    P+PPP P
Sbjct: 41  ETPKRYTANPPLGSLPAPPTTPEPPPTP 68


>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -1

Query: 321 LPPPSHGEPARLLAPQPPPEP 259
           LPPP  G PA   AP PPP P
Sbjct: 291 LPPPFGGHPA--AAPPPPPLP 309


>SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)
          Length = 361

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +2

Query: 140 CASEKELYDKIRKSVRSGNVAKPRS-KGAERQRRAPTSFTKGS------GGGCGAKRRAG 298
           C+S      +  +S   G  A P   +  +R+R+ PT+ T  +      G G G +R  G
Sbjct: 102 CSSMDTSQYEEEESASKGQEANPHPPRVRKRKRKRPTATTTTTKQGPVCGRGGGGRRGGG 161

Query: 299 SPCEGGG 319
             C GGG
Sbjct: 162 GCCGGGG 168


>SB_19172| Best HMM Match : GRP (HMM E-Value=4.9)
          Length = 278

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +2

Query: 140 CASEKELYDKIRKSVRSGNVAKPRS-KGAERQRRAPTSFTKGS------GGGCGAKRRAG 298
           C+S      +  +S   G  A P   +  +R+R+ PT+ T  +      G G G +R  G
Sbjct: 19  CSSMDTSQYEEEESASKGQEANPHPPRVRKRKRKRPTATTTTTKQGPVCGRGGGGRRGGG 78

Query: 299 SPCEGGG 319
             C GGG
Sbjct: 79  GCCGGGG 85


>SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9)
          Length = 224

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +2

Query: 140 CASEKELYDKIRKSVRSGNVAKPRS-KGAERQRRAPTSFTKGS------GGGCGAKRRAG 298
           C+S      +  +S   G  A P   +  +R+R+ PT+ T  +      G G G +R  G
Sbjct: 102 CSSMDTSQYEEEESASKGQEANPHPPRVRKRKRKRPTATTTTTKQGPVCGRGGGGRRGGG 161

Query: 299 SPCEGGG 319
             C GGG
Sbjct: 162 GCCGGGG 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,520,392
Number of Sequences: 59808
Number of extensions: 285270
Number of successful extensions: 1399
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)