Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0250
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016446-2|AAC24165.1|   70|Caenorhabditis elegans Hypothetical ...    32   0.44 
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z49867-3|CAA90029.2|  433|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z31590-4|CAD27606.1|  495|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z31590-3|CAD27605.1|  607|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z31590-2|CAD27604.1|  538|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U25175-1|AAC36130.1|  433|Caenorhabditis elegans GATA-factor pro...    28   5.5  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   5.5  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   5.5  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    28   5.5  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    28   5.5  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z68507-6|CAA92829.1|  240|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF016446-2|AAC24165.1|   70|Caenorhabditis elegans Hypothetical
           protein C02E7.6 protein.
          Length = 70

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 18/44 (40%), Positives = 19/44 (43%)
 Frame = +2

Query: 251 FTKGSGGGCGAKRRAGSPCEGGGKVARWEDSIARLEAVAAGAGG 382
           F  G GGGCG        C  GG  A     +A   A AA AGG
Sbjct: 19  FPSGGGGGCGCAPPPPPACGCGGGAAPPPAYVAPAPAYAAPAGG 62


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +2

Query: 242 PTSFTKGSGGGCGAKRRAGSPCEGGGKVARWEDSIARLEAVAAGAGGG 385
           P+    G GGGCG     G  C GGG             A   G GGG
Sbjct: 21  PSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGG 68


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 260 GSGGGCGAKRRAGSPCEGG--GKVARWEDSIARLEAVAAGAGGGD 388
           G+ G  GA  + G P + G  G  A +     R  A+A G GGGD
Sbjct: 208 GNPGSAGADGQPGGPGQDGAPGSDAAYCPCPPRSGAIAGGGGGGD 252


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 260 GSGGGCGAKRRAGSPCEGG--GKVARWEDSIARLEAVAAGAGGGD 388
           G+ G  GA  + G P + G  G  A +     R  A+A G GGGD
Sbjct: 208 GNPGSAGADGQPGGPGQDGAPGSDAAYCPCPPRSGAIAGGGGGGD 252


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 218 GAERQRRAPTSFTKGSGGGCGAKRRAGSPCEGGGKVARWEDSIARLE 358
           G+  +   P SFT   G GC  K      CE GGK A     + + E
Sbjct: 313 GSHLECACPASFT---GKGCEFKNTGCKTCENGGKCAEAAGGLQKCE 356


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +2

Query: 191 GNVAKPRSKGAERQRRAPTSFTKGSGGG-CGAKRRAGSPCEGGGKVARWEDS----IARL 355
           G    PR  G+    RA  +F  G GGG  G +   G    GG   A+ EDS     ++ 
Sbjct: 115 GTGTTPRGGGSVG--RASGAFFAGRGGGRIGGENGFGGATNGGSPAAQNEDSPGTYQSKF 172

Query: 356 EAVAAGAGGG 385
            A+  G G G
Sbjct: 173 NALRRGGGAG 182


>Z49867-3|CAA90029.2|  433|Caenorhabditis elegans Hypothetical
           protein C33D3.1 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +2

Query: 95  CGVIFSF*RRERATRCASEKELYDKIRKSVRSGNVAKPRSKGAERQRRAPTSFTKGSGGG 274
           CG+ F      R T    E  L  + RKS +SG+ + P +  A R+R+   + +      
Sbjct: 261 CGLYFKLHHIPRPTSMKKEGALQTRKRKS-KSGDSSTPSTSRA-RERKFERASSSTEKAQ 318

Query: 275 CGAKRRAGS 301
             + RRAGS
Sbjct: 319 RSSNRRAGS 327


>Z31590-4|CAD27606.1|  495|Caenorhabditis elegans Hypothetical
           protein R01H10.3d protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 315 PPSHGEPARLLAPQPPPEPLV-NDVGARRCRSAPLERGFATLPLRT 181
           PPS  +P+   +  P P P+V +D+G    R AP  R  ++   RT
Sbjct: 430 PPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRT 475


>Z31590-3|CAD27605.1|  607|Caenorhabditis elegans Hypothetical
           protein R01H10.3c protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 315 PPSHGEPARLLAPQPPPEPLV-NDVGARRCRSAPLERGFATLPLRT 181
           PPS  +P+   +  P P P+V +D+G    R AP  R  ++   RT
Sbjct: 430 PPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRT 475


>Z31590-2|CAD27604.1|  538|Caenorhabditis elegans Hypothetical
           protein R01H10.3b protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 315 PPSHGEPARLLAPQPPPEPLV-NDVGARRCRSAPLERGFATLPLRT 181
           PPS  +P+   +  P P P+V +D+G    R AP  R  ++   RT
Sbjct: 430 PPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRT 475


>Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical
           protein R01H10.3a protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 315 PPSHGEPARLLAPQPPPEPLV-NDVGARRCRSAPLERGFATLPLRT 181
           PPS  +P+   +  P P P+V +D+G    R AP  R  ++   RT
Sbjct: 430 PPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRASRT 475


>U25175-1|AAC36130.1|  433|Caenorhabditis elegans GATA-factor
           protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +2

Query: 95  CGVIFSF*RRERATRCASEKELYDKIRKSVRSGNVAKPRSKGAERQRRAPTSFTKGSGGG 274
           CG+ F      R T    E  L  + RKS +SG+ + P +  A R+R+   + +      
Sbjct: 261 CGLYFKLHHIPRPTSMKKEGALQTRKRKS-KSGDSSTPSTSRA-RERKFERASSSTEKAQ 318

Query: 275 CGAKRRAGS 301
             + RRAGS
Sbjct: 319 RSSNRRAGS 327


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 PPPSHGEPARLLAPQPPPEP 259
           PPP  G+ + LLA  PPP P
Sbjct: 679 PPPMPGDLSSLLAAAPPPPP 698


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 PPPSHGEPARLLAPQPPPEP 259
           PPP  G+ + LLA  PPP P
Sbjct: 679 PPPMPGDLSSLLAAAPPPPP 698


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 339 SSQRATLPPPSH-GEPARLLAPQPPPEPLVNDVGARRCRSAPLE 211
           S  +AT PPP     PAR  A  PPP P      + + R  PLE
Sbjct: 164 SQPKATAPPPPLVPAPARATASTPPPAPPAARAQSPK-REEPLE 206


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 339 SSQRATLPPPSH-GEPARLLAPQPPPEPLVNDVGARRCRSAPLE 211
           S  +AT PPP     PAR  A  PPP P      + + R  PLE
Sbjct: 524 SQPKATAPPPPLVPAPARATASTPPPAPPAARAQSPK-REEPLE 566


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 119 RRERATRCASEKELYD-KIRKSVRSGNVAKPRSKGAERQRRAPTSFTKGSGGGCGAKRRA 295
           ++ +  R   + +L D +++K +R+   AK ++KG   +R  P    K +GGG G + R 
Sbjct: 770 KKGKTGRPNGQYKLVDSRMKKDLRAAK-AKEKTKGRGGKRGIP----KKTGGGGGGRGRG 824

Query: 296 GSPCEGGGK 322
           G    GGG+
Sbjct: 825 GGG-RGGGR 832


>Z68507-6|CAA92829.1|  240|Caenorhabditis elegans Hypothetical
           protein M18.7a protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 146 SEKELYDKIRKSVRSGNVAKPRSKGAERQRRAPTSFTKGSGGGCGAK 286
           S +++  K RK+  +G++ K    GA R    PT   + SGG  G K
Sbjct: 10  SLEDIISKTRKT--TGSIQKKSFGGARRGNTRPTGLPRRSGGSGGWK 54


>Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical
           protein M195.1 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 191 GNVAKPRSKGAERQRR-APTSFTKGSGGGCGAKRRAGSPCEGGG 319
           G+  +P   G +     A T    G  G  G +  AG P EGGG
Sbjct: 248 GSAGQPGQDGPQGPAGDAGTDGAPGQAGAAGEQGEAGQPGEGGG 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,414,446
Number of Sequences: 27780
Number of extensions: 205182
Number of successful extensions: 1403
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)