Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0250
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42130.1 68416.m04326 glycine-rich protein 32 0.41
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 31 0.72
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 31 0.95
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 30 1.3
At5g37750.1 68418.m04544 DNAJ heat shock N-terminal domain-conta... 30 1.3
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 30 1.3
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 30 1.3
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 30 1.3
At5g37440.1 68418.m04504 DNAJ heat shock N-terminal domain-conta... 30 1.7
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 30 1.7
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 30 1.7
At5g13760.1 68418.m01604 expressed protein similar to unknown pr... 29 2.2
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 2.2
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 2.2
At4g30460.1 68417.m04325 glycine-rich protein 29 2.2
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 29 2.2
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 2.9
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 29 3.8
At4g01410.1 68417.m00181 harpin-induced family protein / HIN1 fa... 28 5.1
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 28 5.1
At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing ... 28 5.1
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 28 5.1
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 5.1
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ... 28 6.7
At4g22900.1 68417.m03308 expressed protein 28 6.7
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 6.7
At3g50130.1 68416.m05480 expressed protein ; expression supporte... 28 6.7
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 6.7
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 28 6.7
At1g61080.1 68414.m06877 proline-rich family protein 28 6.7
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 6.7
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro... 27 8.9
At4g33660.1 68417.m04781 expressed protein 27 8.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 8.9
At1g67930.1 68414.m07757 Golgi transport complex protein-related... 27 8.9
At1g53640.1 68414.m06100 hypothetical protein ; expression suppo... 27 8.9
At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family... 27 8.9
>At3g42130.1 68416.m04326 glycine-rich protein
Length = 65
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +2
Query: 263 SGGGCGAKRRAGSPCEGGG 319
SGGGCG KR G EGGG
Sbjct: 47 SGGGCGGKRYGGGGREGGG 65
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 333 QRATLPPPSHGEPARLLAPQPPPEPLV 253
+RA LPPP R AP PPP PL+
Sbjct: 25 RRAPLPPPPPPPLMRRRAPPPPPPPLM 51
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 324 TLPPPSHGEPARLLAPQ---PPPEPLVNDVGARRCRSAP 217
T PPP+ + A + +P PPP PL ++ R C+S P
Sbjct: 55 THPPPNPSQEAPVPSPYPPPPPPSPLFTNLPFRICQSQP 93
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 212 SKGAERQRRAPTSFTKGSGGGCGAKRRAGSPCEGGGKVA 328
+K AE++ G+GGG GA A +P GGG A
Sbjct: 48 AKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAA 86
>At5g37750.1 68418.m04544 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 254
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 149 EKELYDKIRKSVRSGNVAKPRSKGAERQRRAPTSFT 256
++ YD+ RK+ + G +KP++ + +QR++ T +T
Sbjct: 126 QRSSYDQRRKNSKQGKSSKPKATDSSKQRKSRTFWT 161
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 339 SSQRATLPPPSHGEPARLLAPQPPPEPLVNDVGARRCRSAPLERGFATLP 190
+ ++ ++PPP+H +L P PP PL + R + + G A P
Sbjct: 592 AGRKKSVPPPAHASEIQLWQPTPPKTPLSRSKPKGKGRKSIQDSGKARGP 641
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 212 SKGAERQRRAPTSFTKGSGGGCGAKRRAGSPCEGGGKVA 328
+K AE++ G+GGG GA A +P GGG A
Sbjct: 48 AKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAA 86
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 212 SKGAERQRRAPTSFTKGSGGGCGAKRRAGSPCEGGGKVA 328
+K AE++ G+GGG GA A +P GGG A
Sbjct: 48 AKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAA 86
>At5g37440.1 68418.m04504 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 287
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 149 EKELYDKIRKSVRSGNVAKPRSKGAERQRRAPTSFT 256
++ YD+ RK + G +KP++ + +QR++ T +T
Sbjct: 130 QRSSYDQRRKKSKQGKSSKPKAADSSKQRKSRTFWT 165
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 345 MESSQRATLPPPSHGE-PARLLAPQPPPEP 259
M+ +R++ P P+ + PA P PPPEP
Sbjct: 142 MQKPKRSSTPKPTESDKPASSYGPTPPPEP 171
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = +2
Query: 188 SGNVAKPRSKG----AERQRR----APTSFTKGSGGGCGAKRRAGSPCEGG 316
SG KP +G + +RR AP +G GGG G RR G EGG
Sbjct: 92 SGGYTKPSGEGDVSKSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSNEGG 142
>At5g13760.1 68418.m01604 expressed protein similar to unknown
protein (gb AAF63775.1)
Length = 569
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 336 SQRATLPPPSHGEPARLLAPQPPPEP 259
S+ T PPP+ +P R + QPPP P
Sbjct: 67 SRFTTPPPPNLAQPLRSSSRQPPPPP 92
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 333 QRATLPPPSHGEPARLLAPQPPPEP 259
+RA LPPP R + P+PPP P
Sbjct: 50 RRAPLPPPPPPAMRRRVLPRPPPPP 74
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 333 QRATLPPPSHGEPARLLAPQPPPEP 259
+RA LPPP P R AP PPP P
Sbjct: 36 RRAPLPPPP-PPPMRRRAPLPPPPP 59
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPPEP 259
PPP P R AP PPP P
Sbjct: 26 PPPPPPPPMRRRAPLPPPPP 45
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +2
Query: 266 GGGCGAKRRAGSPCEGGGKVARWEDSIARLEAVAAGAGGGD 388
GGG G +RR+G GGG R R E G GGGD
Sbjct: 120 GGGGGYERRSGGYGSGGGGGGRGYGGGGRRE--GGGYGGGD 158
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 266 GGGCGAKRRAGSPCEGGGKVARWEDSIARLEAVAAGAGGGD 388
GGG G+ AGS GGG + S + + ++G GGGD
Sbjct: 52 GGGSGSGAGAGSGSGGGGSSS--SSSSSSSSSSSSGGGGGD 90
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 318 PPPSHG-EPARLLAPQPPPEPLVNDVGARRCRSAP 217
PPPS EP+R P PPP P +RR +P
Sbjct: 141 PPPSKTHEPSRPNTPPPPPPPSKTHEPSRRITPSP 175
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 315 PPSHGEPARLLAPQPPPEP 259
PPS G+ LL P PPP P
Sbjct: 471 PPSSGDHVTLLPPPPPPPP 489
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPPEPLVNDVGARR 232
PPP PA AP PPP P + G+ R
Sbjct: 645 PPPPTRIPAAKCAPPPPPPPPTSHSGSIR 673
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 315 PPSHGEPARLLAPQPPPEPLV 253
PP EP+R+ +P PPP P V
Sbjct: 335 PPQLVEPSRVQSPSPPPPPPV 355
>At4g01410.1 68417.m00181 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein
similar to harpin-induced protein hin1 ( GI:1619321)
[Nicotiana tabacum]
Length = 227
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 185 RSGNVAKPRSKGAERQRRAPTSFTKGSGGGCGAKRRA 295
++ + AK K A P S++K GGG G RRA
Sbjct: 7 KAEHAAKADHKNAPSASSTPESYSKEGGGGGGDARRA 43
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 188 SGNVAKPRSKGAERQRRAPTSFTKGSGGGCGAKRRAGSPCEGGGK 322
+G AK KGA KG+GG GAK G+ +GGGK
Sbjct: 249 AGGPAKNGGKGAPAAGGGGAGGGKGAGG--GAKGGPGNQNQGGGK 291
>At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing
protein
Length = 330
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 161 YDKIRKSVRSGNVAKPRSKGAERQRRAP-TSFTKGSGGGCGAKRRAGS 301
+D S G+V +P+ + ++ ++ P + + G GGG G RAGS
Sbjct: 25 HDGTGASANGGHVLRPQLQPQQQPQQQPHPNGSGGGGGGGGGSIRAGS 72
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 342 ESSQRATLPPPSHGEPARLLAPQPPPEPLVNDVGARRCRSAP 217
+ Q + +PPP P + + P PPP+ L + G R P
Sbjct: 275 QPQQHSMVPPPMQFRPPQGMPPPPPPQFLNHQQGFGGPRPPP 316
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 345 MESSQRATLPPPSHG-EPARLLAPQPPPEP 259
M S RAT PPPS P+ P PPP P
Sbjct: 478 MSPSFRATPPPPSSKMSPSVKAYPPPPPPP 507
>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 830
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 41 DRERVMFSCRNYGVSS*KCGVIFSF*RRERATRCASEKEL 160
DR +F+CR VS C SF E +TRC EKE+
Sbjct: 190 DRVTGLFNCRG-DVSPEVCRRCVSFAVNETSTRCPIEKEV 228
>At4g22900.1 68417.m03308 expressed protein
Length = 343
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 260 GSGGGCGAKRRAGSPCEGGGKVARWEDSIARLEAVAAGA 376
GS GG A + GGGK++RW+ ++ + GA
Sbjct: 234 GSSGGVVASSTEVNGGNGGGKLSRWKVAVGSVIGSGIGA 272
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPPEP 259
PPP H P +P PPPEP
Sbjct: 539 PPPPHSPPPPQFSP-PPPEP 557
>At3g50130.1 68416.m05480 expressed protein ; expression supported
by MPSS
Length = 564
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 324 TLPPPSHGEPARLLAPQPPPEPLVNDVGARR 232
T PPP P+ P+PPP P + RR
Sbjct: 8 TPPPPPPPPPSFRSIPRPPPPPSFRSIPPRR 38
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -1
Query: 324 TLPPPSHGEPARLLAPQPPPEPLVNDVGARRCRSAPL 214
+LPPP P R P PPP ++ G P+
Sbjct: 215 SLPPPKPPSPPRKPPPPPPPPAFMSSSGGSDYSDLPV 251
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPPEP 259
PPP P RLL+ QP P P
Sbjct: 197 PPPPTPRPPRLLSSQPAPPP 216
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 327 ATLPPPSHGEPARLLAPQPPPEP 259
A PPP P AP PPP P
Sbjct: 533 AVAPPPPPPPPGTAAAPPPPPPP 555
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPPEPLVN 250
PPP P + AP PPP P+ N
Sbjct: 562 PPPPPPPPMQNRAPSPPPMPMGN 584
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 327 ATLPPPSHGEPARLLAPQPPPEP 259
A PPP P AP PPP P
Sbjct: 546 AAAPPPPPPPPGTQAAPPPPPPP 568
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 324 TLPPPSHGEPARLLAPQPPPEPL 256
T PPP P L AP PP PL
Sbjct: 145 TNPPPPPESPPSLPAPDPPSNPL 167
>At5g67470.1 68418.m08507 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 899
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -1
Query: 339 SSQRATLPPPSHGEPARLLAPQPPPEP 259
+ +++ +PPP P P PPP P
Sbjct: 360 TQEKSPVPPPRRSPPPLQTPPPPPPPP 386
>At4g33660.1 68417.m04781 expressed protein
Length = 76
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPPEP 259
PPP G P + P PPP P
Sbjct: 20 PPPPVGVPPQYYPPPPPPPP 39
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPP 265
PPP H P + +P PPP
Sbjct: 574 PPPVHSPPPPVYSPPPPP 591
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPP 265
PPP H P + +P PPP
Sbjct: 603 PPPVHSPPPPVYSPPPPP 620
>At1g67930.1 68414.m07757 Golgi transport complex protein-related
similar to golgi transport complex protein (GTC90)
GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
Length = 832
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 248 SFTKGSGGGCGAK--RRAGSPCEGGGKVAR 331
+ T GSGGG G R +GSP GGG R
Sbjct: 293 AITSGSGGGFGPGGIRSSGSPHIGGGAKVR 322
>At1g53640.1 68414.m06100 hypothetical protein ; expression
supported by MPSS
Length = 290
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = +2
Query: 173 RKSVRSGNVAKPRSKGAERQRRAPTSFTKG---SGGGCGAKRRAGSPCEGG 316
+ +V+ G + G + S TKG GGGCG G C GG
Sbjct: 236 KDNVKKGETTGKKDGGLVVVSSSEKSKTKGCCCGGGGCGGGGGCGGGCGGG 286
>At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 383
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 318 PPPSHGEPARLLAPQPPP 265
PPPS P LL P PPP
Sbjct: 226 PPPSQPLPRPLLLPPPPP 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,937
Number of Sequences: 28952
Number of extensions: 195597
Number of successful extensions: 1611
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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