Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0246
         (497 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...   119   2e-29
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   1.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   2.7  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score =  119 bits (286), Expect = 2e-29
 Identities = 61/114 (53%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
 Frame = +3

Query: 3   GTADFLSKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA- 179
           GT  F+  +Q G   +      MIGQFGVGFYSA+LVAD VTV SK+NDD Q+VW+S A 
Sbjct: 107 GTKAFMEALQAGADIS------MIGQFGVGFYSAYLVADKVTVVSKNNDDEQYVWESSAG 160

Query: 180 NSFSVAEDPRGDTLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYL 341
            SF+V +D RG+ L RGT + LHMKE+ +++L+   I+ +VKK+SQFI +PI L
Sbjct: 161 GSFTVTQD-RGEPLGRGTKIVLHMKEDQTEFLEEHKIKEIVKKHSQFIGYPIKL 213


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 120 SVTVASKHNDDRQ-HVWQSDANSFSV 194
           SV   SK+ DD + H WQ+D +  +V
Sbjct: 104 SVNENSKNGDDDEGHEWQADVSEEAV 129


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +3

Query: 78  QFGVGFYSAFLVADSVTVASKH-NDDRQHVWQSDANSFSVAED 203
           QFG+     +    + T+ S    DD    W  D  SFS+  D
Sbjct: 11  QFGLQLECNWSSGPNATLQSSACTDDLSSCWSEDMGSFSLPLD 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,698
Number of Sequences: 336
Number of extensions: 816
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)