Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0246
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   113   2e-26
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   2.7  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.8  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  113 bits (271), Expect = 2e-26
 Identities = 56/102 (54%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
 Frame = +3

Query: 39  EKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGD 215
           E +A+     MIGQFGVGFYSA+LVAD V V SKHNDD Q++W+S A  SF+V  D  G 
Sbjct: 107 EAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGP 166

Query: 216 TLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYL 341
            L RGT + L MKE+   YL+  TI+  VKK+S+FI++PI L
Sbjct: 167 RLLRGTEIRLFMKEDQLQYLEEKTIKDTVKKHSEFISYPIQL 208


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  DFLSKMQDGEKSAAPEMNDMIGQF 83
           D LSK Q+  K +AP++ D I  F
Sbjct: 140 DDLSKEQESRKESAPQLYDQINAF 163


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 21  SKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDANSFS 191
           S++  G KSA+   N ++        S+F +  S  +  KH + +Q   Q+++ SFS
Sbjct: 20  SQVPSGSKSAST--NGLLSAASSAAGSSFGLTPSAILQQKHENAQQGKKQNNSKSFS 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,048,364
Number of Sequences: 5004
Number of extensions: 13610
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)