Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0246
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 140 7e-34
04_01_0042 + 473912-474058,474208-474349,474442-476264 121 3e-28
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 117 5e-27
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 117 5e-27
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 117 6e-27
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 106 1e-23
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 96 1e-20
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 96 2e-20
03_05_0373 + 23581812-23583293 30 0.90
02_02_0643 + 12590928-12592172,12592609-12592698 29 2.1
07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446 28 4.8
02_02_0644 + 12593913-12595154 27 6.3
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 140 bits (338), Expect = 7e-34
Identities = 66/117 (56%), Positives = 90/117 (76%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GTADFLSKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDAN 182
GT+ F+ KMQ G ++N +IGQFGVGFYS +LVAD V V SKHNDD+QHVW+S A+
Sbjct: 203 GTSAFVEKMQTGG-----DLN-LIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKAD 256
Query: 183 -SFSVAEDPRGDTLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYLWAS 350
SF+++ED + L RGT + LH+++EA +Y++ D ++ LVKKYS+FINFPIYLWA+
Sbjct: 257 GSFAISEDTWNEPLGRGTEIRLHLRDEAKEYVEEDKLKDLVKKYSEFINFPIYLWAT 313
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 121 bits (292), Expect = 3e-28
Identities = 58/116 (50%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Frame = +3
Query: 3 GTADFLSKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA- 179
GT +F+ +Q G + MIGQFGVGFYSA+LVA+ V V +KHNDD Q+VW+S A
Sbjct: 109 GTKEFMEALQAGADVS------MIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYVWESQAG 162
Query: 180 NSFSVAEDPRGDTLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYLWA 347
SF+V D G+ L RGT +TL +K++ +YL+ ++ LVKK+S+FI++PIYLW+
Sbjct: 163 GSFTVTLDTAGERLGRGTKITLFLKDDQLEYLEERRLKDLVKKHSEFISYPIYLWS 218
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 117 bits (282), Expect = 5e-27
Identities = 55/103 (53%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = +3
Query: 39 EKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGD 215
E AA MIGQFGVGFYSA+LVA+ V V +KHNDD Q+VW+S A SF+V D G+
Sbjct: 108 EALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGE 167
Query: 216 TLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYLW 344
L RGT +TL++K++ +YL+ ++ LVKK+S+FI++PI LW
Sbjct: 168 QLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLW 210
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 117 bits (282), Expect = 5e-27
Identities = 55/103 (53%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = +3
Query: 39 EKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGD 215
E AA MIGQFGVGFYSA+LVA+ V V +KHNDD Q+VW+S A SF+V D G+
Sbjct: 108 EALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGE 167
Query: 216 TLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYLW 344
L RGT +TL++K++ +YL+ ++ LVKK+S+FI++PI LW
Sbjct: 168 QLGRGTKITLYLKDDQLEYLEERRLKDLVKKHSEFISYPISLW 210
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 117 bits (281), Expect = 6e-27
Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Frame = +3
Query: 39 EKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGD 215
E AA MIGQFGVGFYSA+LVA+ V V +KHNDD Q+VW+S A SF+V D G+
Sbjct: 108 EALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGE 167
Query: 216 TLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYLW 344
L RGT +TL++K++ +YL+ ++ L+KK+S+FI++PI LW
Sbjct: 168 QLGRGTKITLYLKDDQLEYLEERRLKDLIKKHSEFISYPISLW 210
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 106 bits (254), Expect = 1e-23
Identities = 52/118 (44%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
Frame = +3
Query: 3 GTADFLSKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKH-NDDRQHVWQSDA 179
GTA FL +++ +++ +++IGQFGVGFYSAFLV+D V V++K D+Q+VW+ +A
Sbjct: 449 GTAKFLKALKESQEAGVD--SNLIGQFGVGFYSAFLVSDKVAVSTKSPKSDKQYVWEGEA 506
Query: 180 --NSFSVAEDPRGDTL-KRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYLW 344
+S+++ E+ + L RGT LTL++K E + + I+ LVK YSQF++FPIY W
Sbjct: 507 ESSSYTIREETDPEKLLPRGTRLTLYLKREDKGFAHPEKIQKLVKNYSQFVSFPIYTW 564
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 96.3 bits (229), Expect = 1e-20
Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 6/120 (5%)
Frame = +3
Query: 3 GTADFLSKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKH-NDDRQHVWQ--S 173
GT+ FL +++ + A N +IGQFGVGFYSAFLVA+ V V++K D+Q+VW+ +
Sbjct: 188 GTSKFLKALKENKDLGAD--NGLIGQFGVGFYSAFLVAEKVVVSTKSPKADKQYVWEAMA 245
Query: 174 DANSFSVAE--DPRGDTLKRGTHLTLHMKEEAS-DYLQADTIRALVKKYSQFINFPIYLW 344
D++S+ + E DP L RGT +TL ++++ ++ I+ LVK YSQF++FPIY W
Sbjct: 246 DSSSYVIKEETDPE-KMLTRGTQITLFLRDDDKYEFADPGRIQGLVKNYSQFVSFPIYTW 304
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 95.9 bits (228), Expect = 2e-20
Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 6/120 (5%)
Frame = +3
Query: 3 GTADFLSKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKH-NDDRQHVWQ--S 173
GT+ FL +++ + A N +IGQFGVGFYSAFLVA+ V V++K D+Q+VW+ +
Sbjct: 438 GTSKFLKALKENKDLGAD--NGLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVWEGVA 495
Query: 174 DANSFSVAE--DPRGDTLKRGTHLTLHMK-EEASDYLQADTIRALVKKYSQFINFPIYLW 344
D++S+ + E DP L RGT +TL ++ ++ ++ I+ LVK YSQF++FPIY W
Sbjct: 496 DSSSYVIKEETDPE-KMLTRGTQITLVLRPDDKFEFADPGRIQGLVKNYSQFVSFPIYTW 554
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 84 GVGFYSAFLVADSVTVASKHNDDRQHVWQSDANSFSV 194
G G A +VAD + + H D + VW++DA +V
Sbjct: 144 GSGLVKAIVVADDGRIFTGHQDGKVRVWRADAGDPAV 180
>02_02_0643 + 12590928-12592172,12592609-12592698
Length = 444
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +3
Query: 75 GQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDANSFSVAEDPRGDTLKRGTHLTLHMK 254
G G GFY D + A K ND + S N + + +PR + G L ++
Sbjct: 208 GPLGGGFYVLNNKEDLLVYAPKANDRHGELTMSSVNKYQLRRNPRPTMPEPGEVLARYLV 267
Query: 255 EEASDYL 275
E L
Sbjct: 268 ESRGHLL 274
>07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446
Length = 578
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 99 SAFLVADSVTVASKHNDDRQHVWQSDANSFSVAEDPRGDT-LKRGTHLTLHMKEEA-SDY 272
+A + A + SKH HVW + N S+ R T L++ HL L + + S++
Sbjct: 482 NAEVTAHQLLWKSKHEAAFFHVWNTRMNMSSILSTARKSTLLQQHDHLELESRADVISEF 541
Query: 273 LQADTIRALV 302
L+ RA V
Sbjct: 542 LKLWVDRAPV 551
>02_02_0644 + 12593913-12595154
Length = 413
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +3
Query: 75 GQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDANSFSVAEDPRGDTLKRGTHLTLHMK 254
G G GFY D + K +D+ + S F V +PR G L ++
Sbjct: 209 GPLGGGFYVLNNKEDLLVYTPKADDEHGELTMSSVKKFEVRRNPRSTMPGPGEVLGRYLV 268
Query: 255 EEASD 269
E D
Sbjct: 269 ESQGD 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,660,074
Number of Sequences: 37544
Number of extensions: 105876
Number of successful extensions: 436
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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