Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0246
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      130   6e-31
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      108   2e-24
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    81   4e-16
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.92 
SB_53327| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  130 bits (314), Expect = 6e-31
 Identities = 55/80 (68%), Positives = 71/80 (88%)
 Frame = +3

Query: 111 VADSVTVASKHNDDRQHVWQSDANSFSVAEDPRGDTLKRGTHLTLHMKEEASDYLQADTI 290
           +AD V V SK+NDD+Q++W+SDA+SFS++EDPRG TLKRGT ++LH+KEEA DYL+ +TI
Sbjct: 175 IADRVIVTSKNNDDKQYIWESDASSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPETI 234

Query: 291 RALVKKYSQFINFPIYLWAS 350
           + LVKKYSQFINFPI+LW S
Sbjct: 235 KDLVKKYSQFINFPIFLWTS 254


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  108 bits (260), Expect = 2e-24
 Identities = 50/92 (54%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
 Frame = +3

Query: 69  MIGQFGVGFYSAFLVADSVTVASKHNDDRQHVWQSDA-NSFSVAEDPRGDTLKRGTHLTL 245
           MIGQFGVGFYSA+LVA+ V V +KHNDD Q++W+S A  SF+V  D  G+ L RGT + L
Sbjct: 66  MIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRD-SGEPLGRGTKIVL 124

Query: 246 HMKEEASDYLQADTIRALVKKYSQFINFPIYL 341
           ++KE+ ++YL+   I+ +VKK+SQFI +P+ L
Sbjct: 125 YLKEDQTEYLEEKRIKEIVKKHSQFIGYPLSL 156


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
 Frame = +3

Query: 3   GTADFLSKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASK--HNDDRQHVWQSD 176
           G+  F+ K+++  +S+     ++IGQFGVGFYS F+VAD V V +K    + + + W SD
Sbjct: 156 GSKVFMEKLKNEARSSH---ENIIGQFGVGFYSTFMVADKVDVYTKSYQPNSQGYFWTSD 212

Query: 177 AN-SFSVAEDPRGDTLKRGTHLTLHMKEEASDYLQADTIRALVKKYSQFINFPIYL 341
            + S+  AE    + + RGT L LH+KE+   +     +  +V++YS F+ FPIYL
Sbjct: 213 GSGSYEYAE---ANGVARGTKLVLHLKEDCKRFAMKTAVEDIVQRYSNFVGFPIYL 265


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 21  SKMQDGEKSAAPEMNDMIGQFGVGFYSAFLVADSVTVASKHNDD 152
           SK    E+   P +ND++ ++G    S   + D + + SKH DD
Sbjct: 74  SKPPLAEQDHQPVVNDLLSEYGHAAASCDDIDDGIMIISKHCDD 117


>SB_53327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  PEMNDMIGQFGVGFYSAFLVADSVTVASKHNDD 152
           P +ND++ ++G    S   + D + + SKH DD
Sbjct: 106 PVVNDLLSEYGHAAASCDDIDDGIMIISKHCDD 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,195,623
Number of Sequences: 59808
Number of extensions: 106406
Number of successful extensions: 452
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)