Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0242
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 118 4e-27
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 103 2e-22
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 96 2e-20
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 95 3e-20
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 82 3e-16
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 79 4e-15
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 47 2e-05
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 33 0.20
07_03_0684 + 20675947-20676157,20676236-20676336,20676428-206766... 31 1.1
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 29 4.3
12_01_0084 - 678324-679643 28 5.6
11_01_0083 - 629885-631189 28 5.6
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 28 5.6
12_01_1033 + 10629897-10632311,10633874-10633879 28 7.5
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 28 7.5
02_03_0386 + 18404641-18404673,18406366-18406558,18406688-184067... 28 7.5
01_01_0990 + 7847066-7847478,7847713-7848679 28 7.5
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 118 bits (284), Expect = 4e-27
Identities = 67/175 (38%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Frame = -1
Query: 655 QENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFD 476
+E K E+VDL A+ +L ++ Q AF GF + L + F +E+E+L+ G D
Sbjct: 3464 EETKHEYVDLVAEHILTTAIRPQINAFLEGFTELVPRE-LISLFHDKELELLISGLPEID 3522
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLN-- 302
F +L+ + EY G Y+ S ++ FW +V+ ED + LQF TG+ +VP+ G L
Sbjct: 3523 FDDLKANAEYIG-YSPASPVILWFWEVVNGFSKEDMARFLQFVTGTSKVPLEGFKALQGI 3581
Query: 301 -----FVIARNGPDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAIN-YSKGFG 155
F I + +RLP+AHTCFN L LPEY ++++L++RLL AI+ S+GFG
Sbjct: 3582 SGPQRFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLEERLLLAIHEASEGFG 3636
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 103 bits (246), Expect = 2e-22
Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 9/176 (5%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGS-KVFD 476
EN ++ L A+ LN + Q F RGF + + F E ++L+ GS + D
Sbjct: 855 ENVITYIHLVANHRLNYQIRAQSTHFLRGFQQLIPNEWIN-MFNEHEFQVLISGSLESLD 913
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNL--N 302
+L +T Y GGY D +++ FW ++ S +++K L+F TG R P+ G L
Sbjct: 914 IDDLRSNTNYSGGYHPDHELIDIFWEVLKSFSSHNQKKFLKFVTGCSRGPLLGFQYLEPK 973
Query: 301 FVIARNG------PDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKGFGL 152
F I R G D DRLPT+ TC N+L LP Y + +L+ +LL AIN GF L
Sbjct: 974 FCIQRAGVPGMEEEDEDRLPTSATCMNLLKLPPYRNKTQLESKLLYAINAEAGFDL 1029
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 95.9 bits (228), Expect = 2e-20
Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 7/171 (4%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSK-VFD 476
+N +++V D + + Q AF+ GF V S L F +E+E L+CG + +D
Sbjct: 1310 DNLEQYVSFVVDATIRSGIARQLEAFKSGFNEVFPLSMLQVFSE-DELERLLCGEQDTWD 1368
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLN-- 302
F +L ++D GY S S V + ++ +R LQF TGS R+P GGL LN
Sbjct: 1369 FAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGGLAALNPK 1428
Query: 301 FVIAR---NGPDC-DRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKG 161
+ R N + D LP+ TC N L LP Y ++DK++++LL AI +G
Sbjct: 1429 LTVVRKQHNSNEADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQG 1479
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 95.5 bits (227), Expect = 3e-20
Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFDF 473
ENK +V AD+ LN + AF RG + S L F E ++L G + FD
Sbjct: 995 ENKLHYVHAIADYKLNRQILPFANAFYRGLGDLISPSWLSLFNANEFNQLLSGGLQDFDV 1054
Query: 472 HELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGL------- 314
+L +T+Y GGY S+ V+ FW ++ ++ LL+F T R P+ G
Sbjct: 1055 DDLRNNTKYTGGYTESSRSVKLFWEVIKGFKPTERCMLLKFVTSCSRAPLLGFKYLQPSF 1114
Query: 313 ------CNLNFVIARNGPDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKGFGL 152
C++ G D DRLP+A TC+N L LP Y L+ +LL AI+ + GF L
Sbjct: 1115 TIHKVPCDVTLWATIGGQDVDRLPSASTCYNTLKLPTYKRSSTLRSKLLYAISSNTGFEL 1174
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 82.2 bits (194), Expect = 3e-16
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSK-VFD 476
+N +E+V D L + Q AF+ G V L F +E+E ++CG + +
Sbjct: 1148 DNLEEYVSSIVDATLKSGISNQIEAFKAGINKVFALKTL-RLFSEDEMERILCGEQDSWA 1206
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLNFV 296
++LE +D GY ++S V F I+ ED+R L FTTG+ ++P+GGL +L+
Sbjct: 1207 SNKLEDHINFDYGYDANSASVISFLEILREFGREDQRAFLHFTTGAPQLPLGGLASLDPK 1266
Query: 295 IARNGPDCD-----RLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKG 161
+ CD LP+ +TC + LP Y +++ ++ +L AI G
Sbjct: 1267 LTVVRKQCDGKVDNELPSVNTCRHFFKLPPYSSKEIMRQKLKYAIKEGLG 1316
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 78.6 bits (185), Expect = 4e-15
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Frame = -1
Query: 649 NKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSK-VFDF 473
N +E+V L D + + Q AFR GF V D S L F PEE++ L+CG + +++
Sbjct: 1597 NLEEYVTLVVDATVKSGIMRQVEAFRSGFNQVFDISSL-KIFSPEELDYLICGRREIWEP 1655
Query: 472 HELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLN--F 299
L + ++D GY + S + + I+ E + QF TG+ R+P GGL LN
Sbjct: 1656 DSLVDNIKFDHGYTAKSPAIVNLLEIMAEFTPEQQHAFCQFVTGAPRLPPGGLAALNPKL 1715
Query: 298 VIARNGPDC---------------DRLPTAHTCFNVLLLPEYDTR 209
I R P D LP+ TC N L LP Y T+
Sbjct: 1716 TIVRKHPSSAVNTSNIAGVTESADDDLPSVMTCANYLKLPPYSTK 1760
>09_04_0560 - 18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = -1
Query: 454 TEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNL--NFVIARNG 281
T + G+ SD + + V SL +E +R+LL F T +P G L I +
Sbjct: 729 THFVRGF-SDILVDPELQKAVESLSIEQQRQLLFFWTSVKYLPSDGFGGLASKLYIYKVS 787
Query: 280 PDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLK 182
DRLP++HTCF L LP Y + +++L K
Sbjct: 788 ESADRLPSSHTCFYRLCLPAYPSLKVTRNQLQK 820
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2
Query: 495 VEARFSISTSWKSRQNTMAATRPTLKSYRTFGASCTACRWRTSGSCFSSRPGRTG 331
V+ R + W + AAT T +S R AS ++ R RT S ++ RP R G
Sbjct: 26 VKGRDMAGSGWAADACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYG 80
>07_03_0684 +
20675947-20676157,20676236-20676336,20676428-20676630,
20677024-20677438
Length = 309
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Frame = -2
Query: 510 LKCLFVEARFSISTSWKSR---QNTMAATRPTLKSYRTFGASCTACRWRTSGSCFSSRPG 340
+K ++V + + W +R + T P + SYR F A AC W T+ + S
Sbjct: 196 MKPMYVFSSIWNADDWATRGGLEKTDWTKAPFISSYRDFTAD--ACSWGTAAASPPSCAA 253
Query: 339 RTGCPWADCAT*TL*SRGTARTATGFPPRTLASMSYC-----YPSTTLETNYRTDS 187
TG W D G R + + R L YC +PS E RT S
Sbjct: 254 STGNSWWDQPPAWALDAG-QREDSAWVARNLVIYDYCDDRKRFPSPPEECLLRTTS 308
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 347 DRVGPGARGRTVQLELCDREERPGLRPASHRAHLLQCP 234
D P R Q+ LC R RPGL+P +H P
Sbjct: 83 DDRSPSFPTRHQQVGLCPRRTRPGLKPVWRSSHRYTLP 120
>12_01_0084 - 678324-679643
Length = 439
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 248 LLQCPTATRVRH*RQTTGQTLESHQLL-EGIRFALK 144
+ + T+ + +QT+G +LE QLL EGIR ALK
Sbjct: 394 IFEVTTSYHIIEMKQTSGDSLEYRQLLEEGIRPALK 429
>11_01_0083 - 629885-631189
Length = 434
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 248 LLQCPTATRVRH*RQTTGQTLESHQLL-EGIRFALK 144
+ + T+ + +QT+G +LE QLL EGIR ALK
Sbjct: 394 IFEVTTSYHIIEMKQTSGDSLEYRQLLEEGIRPALK 429
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 459 SRQNTMAATRPTLKSYRTFGASCTACRWRTSGSCFSS-RPGRTG-CPWADC 313
S++NT+ AT TF +S W T+GSC ++ R G CP C
Sbjct: 154 SKRNTLVATGCYSNFTATFTSSLHHHGWSTNGSCTTNGRVNSDGLCPGTAC 204
>12_01_1033 + 10629897-10632311,10633874-10633879
Length = 806
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = -3
Query: 329 ARGRTVQLELCDREERPGLRPASHRAHLLQCPTATRVRH*RQTTGQTLESHQLLEGIRFA 150
AR ++ +E C ++ S H L+ P + + + G H L+ ++
Sbjct: 498 ARSLSIDMEQCSKQLIRSCHGESKLLHSLKPPCRSYLTS-LKLHGDLFRLHGLISMLKNL 556
Query: 149 LKLCYTTTTTQRNAELTQQI 90
+LC ++TTT +L I
Sbjct: 557 YELCLSSTTTTLTRDLVSAI 576
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 269 VAVRAVPRDHKVQVAQSAHGHP--VRPGRELKQLPLVLQRQAVHDAPKVLYDFRV 427
VA+R + + + HP V + QLP + R+A+H PK+L +F +
Sbjct: 642 VAIRDLRDGRRNYIFNREMDHPFTVVSQHGVLQLPTLSPRRAIHTNPKILLEFNL 696
>02_03_0386 +
18404641-18404673,18406366-18406558,18406688-18406773,
18407693-18407824,18407923-18408087,18409440-18409865
Length = 344
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 320 RTVQLELCDREERPGLRPASHRAHLLQCPTATRVRH 213
+T E CD EE G + A+LLQC R H
Sbjct: 295 KTEDEEYCDGEEGYGAADDAAAAYLLQCRKGLRAAH 330
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 549 MRVHSVHSSGRKKLKCLFVEARFSISTSWKSRQNT 445
++ H G KK KC R+++ + WK+ T
Sbjct: 88 IKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,171
Number of Sequences: 37544
Number of extensions: 351784
Number of successful extensions: 1024
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -