Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0242
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    28   0.091
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.0  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   7.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 235 LLLPEYDTRDKLQDRLLKAINYSKGFGLH*SYA 137
           +L P  D+RD+L  R L+A+N      +H S A
Sbjct: 417 VLFPSLDSRDELHPRELEAVNLGSACRIHGSPA 449


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 494 WKQGFRFPRAGKVDRIRWR 438
           +KQGF  P    + +I+WR
Sbjct: 20  YKQGFCQPTQRTMSKIQWR 38



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 257  GGKPVAVRAVPRDHKVQVAQ 316
            GGKP+AV+     H+ Q  Q
Sbjct: 1090 GGKPIAVQIQQSPHQQQQQQ 1109


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 604 HSVKNLHINLQIPFC 648
           HS+  + + +Q+PFC
Sbjct: 15  HSIIQIPVIIQLPFC 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,196
Number of Sequences: 438
Number of extensions: 3563
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)