Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0242
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 116 1e-26
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 114 4e-26
At3g17205.1 68416.m02196 HECT-domain-containing protein / ubiqui... 98 5e-21
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 97 1e-20
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 94 8e-20
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 87 1e-17
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 83 1e-16
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 75 3e-14
At5g06790.1 68418.m00767 expressed protein similar to unknown pr... 33 0.13
At4g11830.2 68417.m01884 phospholipase D gamma 2 / PLD gamma 2 (... 30 1.2
At4g11830.1 68417.m01883 phospholipase D gamma 2 / PLD gamma 2 (... 30 1.2
At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1 (... 29 2.0
At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3 (... 29 2.7
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 28 4.7
At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase sm... 28 4.7
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 28 4.7
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 28 6.2
At2g30200.2 68415.m03673 expressed protein 28 6.2
At2g30200.1 68415.m03672 expressed protein 28 6.2
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 28 6.2
At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NA... 28 6.2
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 28 6.2
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 28 6.2
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 116 bits (279), Expect = 1e-26
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Frame = -1
Query: 655 QENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFD 476
+E K E+VDL A +L ++ Q AF GF + L + F +E+E+L+ G D
Sbjct: 3717 EETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRE-LVSIFNDKELELLISGLPEID 3775
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLNFV 296
F +L+ +TEY Y + S ++ FW +V + ED + LQF TG+ +VP+ G L +
Sbjct: 3776 FDDLKANTEYTS-YTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGI 3834
Query: 295 -------IARNGPDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAIN-YSKGFG 155
I + +RLP+AHTCFN L LPEY ++++LQ+RLL AI+ S+GFG
Sbjct: 3835 SGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGFG 3889
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 114 bits (275), Expect = 4e-26
Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 8/175 (4%)
Frame = -1
Query: 655 QENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFD 476
+E K E+VDL AD +L ++ Q AF G + L + F +E+E+L+ G D
Sbjct: 3484 EETKHEYVDLVADHILTSAIRPQINAFLEGLNELIPRE-LVSIFNDKELELLISGLPEID 3542
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLNFV 296
F +L+ +TEY Y S +++ FW +V + ED + LQF TG+ +VP+ G L +
Sbjct: 3543 FDDLKANTEYTS-YTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGI 3601
Query: 295 -------IARNGPDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAIN-YSKGFG 155
I + +RLP+AHTCFN L LPEY +++++Q+RLL AI+ ++GFG
Sbjct: 3602 SGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGFG 3656
>At3g17205.1 68416.m02196 HECT-domain-containing protein /
ubiquitin-transferase family protein weak similarity to
ubiquitin-protein ligase 2 [Arabidopsis thaliana]
GI:7108523; contains Pfam profile PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 97.9 bits (233), Expect = 5e-21
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGS-KVFD 476
EN F+ L ++ LN + Q F RGF + + + F E+++L+ GS D
Sbjct: 699 ENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWID-MFNEHELQVLISGSVDSLD 757
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLN-- 302
+L +T Y GGY + ++ FW ++ S E+++K L+F TG R P+ G L
Sbjct: 758 IDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPA 817
Query: 301 FVIAR-----NGPDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKGFGL 152
F I R + DRLPT+ TC N+L LP Y +++ L+ +L+ AI+ GF L
Sbjct: 818 FCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAISAEAGFDL 872
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting protein
12 (TRIP12) {Homo sapiens}; contains Pfam profiles
PF00632: HECT-domain (ubiquitin-transferase), PF00514:
Armadillo/beta-catenin-like repeat
Length = 1502
Score = 96.7 bits (230), Expect = 1e-20
Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGS-KVFD 476
+N +E++ + + ++ Q AFR GF V L F EE+E ++CG +F
Sbjct: 1329 DNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHL-RIFNEEELETMLCGECDLFS 1387
Query: 475 FHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLN-- 302
+E+ ++D GY S S V+ I+H E +R LQF TGS R+P GGL +L+
Sbjct: 1388 MNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPK 1447
Query: 301 -FVIARNGPDCD--RLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKG 161
++ ++G D LP+ TC N L LP Y +++K++++L+ AI +G
Sbjct: 1448 LTIVRKHGSDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQG 1497
>At3g53090.1 68416.m05851 HECT-domain-containing protein /
ubiquitin-transferase family protein / IQ
calmodulin-binding motif-containing protein contains Pfam
profiles PF00632: HECT-domain (ubiquitin-transferase),
PF00612: IQ calmodulin-binding motif
Length = 1142
Score = 93.9 bits (223), Expect = 8e-20
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 13/180 (7%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFDF 473
ENK +++ AD+ LN + AF RG + + L F E ++L G+ D
Sbjct: 962 ENKMQYIHAMADYKLNRQIVPFSNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDV 1021
Query: 472 HELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGL------- 314
+L ++T+Y GGY+ S+ ++ FW ++ ++ LL+F T R P+ G
Sbjct: 1022 DDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTF 1081
Query: 313 ------CNLNFVIARNGPDCDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKGFGL 152
C+ + A G D +RLP+A TC+N L LP Y ++++LL AI + GF L
Sbjct: 1082 IIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAGFEL 1141
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 87.0 bits (206), Expect = 1e-17
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 18/181 (9%)
Frame = -1
Query: 649 NKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSK-VFDF 473
N +E++ L D + V Q AFR GF V D + L F P E++ L+CG + +++
Sbjct: 1704 NLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSL-QIFTPSELDYLLCGRRELWEV 1762
Query: 472 HELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLN--F 299
L + ++D GY + S + + I+ L + +R QF TG+ R+P GGL LN
Sbjct: 1763 ETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKL 1822
Query: 298 VIAR----------NGPDC-----DRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSK 164
I R NG D LP+ TC N L LP Y T++ + +LL AIN +
Sbjct: 1823 TIVRKHSSTSSAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQ 1882
Query: 163 G 161
G
Sbjct: 1883 G 1883
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 83.4 bits (197), Expect = 1e-16
Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 18/181 (9%)
Frame = -1
Query: 649 NKKEFVDLYADFLLNVSVETQFRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSK-VFDF 473
N +E++ L D + V Q AFR GF V D + L F P E++ L+CG + +++
Sbjct: 1613 NLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSL-QIFTPSELDYLLCGRRELWEV 1671
Query: 472 HELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCNLN--F 299
L + ++D GY + S + + G L + +R QF TG+ R+P GGL LN
Sbjct: 1672 ETLAEHIKFDHGYNAKSPAIINIMG---ELTADQQRAFCQFVTGAPRLPPGGLAVLNPKL 1728
Query: 298 VIAR----------NGPDC-----DRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSK 164
I R NG D LP+ TC N L LP Y T++ + +LL AIN +
Sbjct: 1729 TIVRKHSSTSSAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQ 1788
Query: 163 G 161
G
Sbjct: 1789 G 1789
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 75.4 bits (177), Expect = 3e-14
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 7/162 (4%)
Frame = -1
Query: 652 ENKKEFVDLYADFLLNVSVETQFRAFRRGFL-MVTDESPLGAFFRPEEVE----MLVCGS 488
+N+K++VDL + + Q + F RGF M++ P +FF+ +E ML G
Sbjct: 698 KNRKQYVDLLIERRFATPILEQVKQFSRGFTDMLSHSVPPRSFFKRLYLEDLDGMLRGGE 757
Query: 487 KVFDFHELEKSTEYDGGYASDSKIVQDFWGIVHSLPLEDKRKLLQFTTGSDRVPVGGLCN 308
+ + TEY+G +D +I FW I+ + E++R +L F T + VPV G
Sbjct: 758 NPISIDDWKAHTEYNGFKETDRQI-DWFWKILKKMTEEEQRSILFFWTSNKFVPVEGFRG 816
Query: 307 LN--FVIARNGPDCDRLPTAHTCFNVLLLPEYDTRDKLQDRL 188
L+ I R DRLP +HTCF L +P Y T ++ RL
Sbjct: 817 LSSKLYIYRLYEANDRLPLSHTCFYRLCIPRYPTITLMEQRL 858
>At5g06790.1 68418.m00767 expressed protein similar to unknown
protein (emb|CAB67623.1); expression supported by MPSS
Length = 209
Score = 33.5 bits (73), Expect = 0.13
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 396 MPQKSCTILESDA*PPSYSVDFSSSWKSKTLLPQTSISTSSGLKNAPSGLSSVTIKNPRR 575
MP KS + S + S S SSS K K+L+ IS L S +SS+ ++ R+
Sbjct: 3 MPLKSTSSSMSSSQCSSSSSPTSSSMKLKSLIQTLIISQVCRLLREISRVSSILVRVLRK 62
Query: 576 NALNCVSTDT--FSKKSAYKSTNSFLF 650
N +S + + K+ + K N+ LF
Sbjct: 63 KQYNFLSVSSLLYPKRVSKKQKNNILF 89
>At4g11830.2 68417.m01884 phospholipase D gamma 2 / PLD gamma 2
(PLDGAMMA2) identical to SP|Q9T051 Phospholipase D gamma
2 (EC 3.1.4.4) (AtPLDgamma2) (PLD gamma 2) [Arabidopsis
thaliana]
Length = 856
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -1
Query: 586 FRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFDFHELEKSTEYDGGYASDSKIVQD 407
F F LM T + FF+ V++L+C H K +E + Y K +
Sbjct: 314 FPGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTM-- 371
Query: 406 FWGIVHSLPLEDKRKLLQFTTGSD 335
IV + +++RK++ F G D
Sbjct: 372 ---IVDAEAAQNRRKIVAFVGGLD 392
>At4g11830.1 68417.m01883 phospholipase D gamma 2 / PLD gamma 2
(PLDGAMMA2) identical to SP|Q9T051 Phospholipase D gamma
2 (EC 3.1.4.4) (AtPLDgamma2) (PLD gamma 2) [Arabidopsis
thaliana]
Length = 824
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -1
Query: 586 FRAFRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFDFHELEKSTEYDGGYASDSKIVQD 407
F F LM T + FF+ V++L+C H K +E + Y K +
Sbjct: 282 FPGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTM-- 339
Query: 406 FWGIVHSLPLEDKRKLLQFTTGSD 335
IV + +++RK++ F G D
Sbjct: 340 ---IVDAEAAQNRRKIVAFVGGLD 360
>At4g11850.1 68417.m01886 phospholipase D gamma 1 / PLD gamma 1
(PLDGAMMA1) identical to phospholipase D gamma 1
SP:Q9T053 from [Arabidopsis thaliana]
Length = 858
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = -1
Query: 577 FRRGFLMVTDESPLGAFFRPEEVEMLVCGSKVFDFHELEKSTEYDGGYASDSKIVQDFWG 398
F+ +M T + FF+ V++L+C H K +E Y K V
Sbjct: 319 FKTQGVMNTSDEETRRFFKHSSVQVLLCPRSGGKGHSFIKKSEVGTIYTHHQKTV----- 373
Query: 397 IVHSLPLEDKRKLLQFTTGSD 335
IV + +++RK++ F G D
Sbjct: 374 IVDAEAAQNRRKIVAFVGGLD 394
>At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3
(PLDGAMMA3) identical to phospholipase D gamma 3
sp:Q9T052 from [Arabidopsis thaliana]
Length = 866
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = -1
Query: 562 LMVTDESPLGAFFRPEEVEMLVCGSKVFDFHELEKSTEYDGGYASDSKIVQDFWGIVHSL 383
LM T + FF+ V++L+C H K +E + Y K + IV +
Sbjct: 331 LMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTM-----IVDAE 385
Query: 382 PLEDKRKLLQFTTGSD 335
+++RK++ F G D
Sbjct: 386 AAQNRRKIVAFVGGLD 401
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 264 SRSQSGPFLAITKFKLHSPPTGTRSDPVVN*SSFRLSSSGKLCTMPQKSCTIL 422
S S SG + K S PTG++SDP + +S LC M + TIL
Sbjct: 664 SLSDSGSPIKSLYVKSSSAPTGSKSDPTDH-NSINSEDDLLLCAMTKDGQTIL 715
>At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 332
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 274 CDRLPTAHTCFNVLLLPEYDTRDKLQDRLLKAINYSKGFGL 152
CD LP A N L+ +Y + + DRLL A+ Y K +G+
Sbjct: 242 CDALPCALVGMNRDLMSQYI--EFVADRLLGALGYGKVYGV 280
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 549 MRVHSVHSSGRKKLKCLFVEARFSISTSWKSRQNT 445
++ H G KK KC R+++ + WK+ T
Sbjct: 146 IKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKT 180
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 438 PPSYSVDFSSSWKSKTLLPQTSISTSSGLKNAPSGLSS 551
PPS + SSS S L+P+++ +++S L + +G++S
Sbjct: 13 PPSPASSTSSSHLSNRLIPRSNSTSASSLITSAAGIAS 50
>At2g30200.2 68415.m03673 expressed protein
Length = 343
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 477 SKTLLPQTSISTSSGLKNAPSGLSSVTIKNPRRN-ALNCVSTDTFSKKSA---YKSTNSF 644
S LLP S++ S KNA G ++ + R + +++ S T S YK T++F
Sbjct: 7 SSLLLPSISLNNLSSSKNASFGFAAKNLSRSRISMSVSAGSQSTTVHDSLFADYKPTSAF 66
Query: 645 LF 650
LF
Sbjct: 67 LF 68
>At2g30200.1 68415.m03672 expressed protein
Length = 393
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 477 SKTLLPQTSISTSSGLKNAPSGLSSVTIKNPRRN-ALNCVSTDTFSKKSA---YKSTNSF 644
S LLP S++ S KNA G ++ + R + +++ S T S YK T++F
Sbjct: 33 SSLLLPSISLNNLSSSKNASFGFAAKNLSRSRISMSVSAGSQSTTVHDSLFADYKPTSAF 92
Query: 645 LF 650
LF
Sbjct: 93 LF 94
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 549 MRVHSVHSSGRKKLKCLFVEARFSISTSWKSRQNT 445
++ H G KK KC R+++ + WK+ T
Sbjct: 144 IKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKT 178
>At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase SP|Q40345 from [Medicago
sativa]
Length = 410
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -1
Query: 442 GGYASDSKIVQDF-W--GIVHSLPLEDKRKLLQFTTGSDRVPVG 320
GG S + I F W G+ H L+D KLL FT + VG
Sbjct: 322 GGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACVG 365
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 549 MRVHSVHSSGRKKLKCLFVEARFSISTSWKSRQNT 445
++ H G KK KC R+++ + WK+ T
Sbjct: 145 IKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKT 179
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 549 MRVHSVHSSGRKKLKCLFVEARFSISTSWKSRQNT 445
++ H G KK KC R+++ + WK+ T
Sbjct: 133 IKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKT 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,277
Number of Sequences: 28952
Number of extensions: 279458
Number of successful extensions: 840
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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