Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0238
(326 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 135 2e-31
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 133 6e-31
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 122 2e-27
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 116 8e-26
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 105 1e-22
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 105 2e-22
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 103 6e-22
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 103 6e-22
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 103 8e-22
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 102 1e-21
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 87 9e-17
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 86 2e-16
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 84 5e-16
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 81 4e-15
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 79 2e-14
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 75 4e-13
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 74 7e-13
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 67 8e-11
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 66 1e-10
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 56 1e-07
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 54 6e-07
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 53 1e-06
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 50 7e-06
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 48 3e-05
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 48 5e-05
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 46 2e-04
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 43 0.002
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 43 0.002
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 43 0.002
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 36 0.17
UniRef50_Q7QNZ3 Cluster: GLP_149_9791_7437; n=2; Giardia lamblia... 33 1.2
UniRef50_Q550Q3 Cluster: Putative uncharacterized protein; n=2; ... 33 1.6
UniRef50_UPI0000F200AE Cluster: PREDICTED: hypothetical protein;... 32 2.1
UniRef50_A2X658 Cluster: Putative uncharacterized protein; n=3; ... 32 2.1
UniRef50_A4CKW9 Cluster: Putative uncharacterized protein; n=1; ... 32 2.8
UniRef50_Q9VYL3 Cluster: CG32654-PC; n=4; Drosophila melanogaste... 31 3.7
UniRef50_Q44233 Cluster: Beta-galactosidase; n=1; Arthrobacter s... 31 4.9
UniRef50_Q1GW38 Cluster: Putative uncharacterized protein; n=1; ... 31 4.9
UniRef50_Q1GFT9 Cluster: Cytochrome c class I; n=2; Rhodobactera... 31 6.5
UniRef50_Q1GF71 Cluster: Transcriptional regulator TetR family; ... 31 6.5
UniRef50_A6G2S2 Cluster: Peptidase S1 and S6, chymotrypsin/Hap; ... 31 6.5
UniRef50_A3UKR0 Cluster: Probable C-5 cytosine-specific DNA meth... 31 6.5
UniRef50_A3C3B6 Cluster: Putative uncharacterized protein; n=3; ... 31 6.5
UniRef50_A2ZFD2 Cluster: Putative uncharacterized protein; n=1; ... 31 6.5
UniRef50_A0BK90 Cluster: Chromosome undetermined scaffold_111, w... 31 6.5
UniRef50_Q4RQE1 Cluster: Chromosome 17 SCAF15006, whole genome s... 30 8.6
UniRef50_Q5QVR0 Cluster: Helicase, ATP-dependent; n=1; Idiomarin... 30 8.6
UniRef50_A3JDF2 Cluster: N-carbamoyl-L-amino acid amidohydrolase... 30 8.6
UniRef50_Q75LF8 Cluster: Putative uncharacterized protein OSJNBb... 30 8.6
UniRef50_Q0CQZ3 Cluster: Putative uncharacterized protein; n=1; ... 30 8.6
UniRef50_O83133 Cluster: TPR repeat-containing protein TP_0095; ... 30 8.6
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 135 bits (327), Expect = 2e-31
Identities = 64/87 (73%), Positives = 73/87 (83%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 244
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN VH ++ KN+RQPY VS+ AG
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAG 59
Query: 245 HQTSAESWGTGRAVARIPRVRGGGTHR 325
HQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 60 HQTSAESWGTGRAVARIPRVRGGGTHR 86
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 133 bits (322), Expect = 6e-31
Identities = 64/89 (71%), Positives = 73/89 (82%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 238
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN+VH + +N+RQ Y VS+
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSEL 60
Query: 239 AGHQTSAESWGTGRAVARIPRVRGGGTHR 325
AGHQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 61 AGHQTSAESWGTGRAVARIPRVRGGGTHR 89
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 122 bits (293), Expect = 2e-27
Identities = 58/84 (69%), Positives = 64/84 (76%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 253
+RP VSV S T G PLP VF +PIRPD+V VH M+KN RQPY VS++AGHQT
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQT 61
Query: 254 SAESWGTGRAVARIPRVRGGGTHR 325
SAESWGTGRAVARIPRV GGGTHR
Sbjct: 62 SAESWGTGRAVARIPRVSGGGTHR 85
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 116 bits (280), Expect = 8e-26
Identities = 55/78 (70%), Positives = 63/78 (80%)
Frame = +2
Query: 92 VYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG 271
VY++KSE + LP VF+AP+RPD+V+ VH + KN RQPY VS EAGHQTSAESWG
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWG 185
Query: 272 TGRAVARIPRVRGGGTHR 325
TGRAVARIPRVRGGGTHR
Sbjct: 186 TGRAVARIPRVRGGGTHR 203
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 105 bits (253), Expect = 1e-22
Identities = 52/82 (63%), Positives = 61/82 (74%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 253
ARP VSVYS S++V G PLP VF APIR D+V VH +M+KNSRQ Y V++ +G
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNH 61
Query: 254 SAESWGTGRAVARIPRVRGGGT 319
SA SWGTGRAVARIPR+ GGGT
Sbjct: 62 SAHSWGTGRAVARIPRISGGGT 83
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 105 bits (252), Expect = 2e-22
Identities = 49/85 (57%), Positives = 64/85 (75%)
Frame = +2
Query: 71 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 250
V RP+VSV+S +E G+ +P VF P+R DLV+ VH +MSKN RQ Y +S+ +G+Q
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQ 60
Query: 251 TSAESWGTGRAVARIPRVRGGGTHR 325
TSA SWGTGRA++R PRV+GGGTHR
Sbjct: 61 TSARSWGTGRALSRTPRVKGGGTHR 85
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 103 bits (248), Expect = 6e-22
Identities = 51/83 (61%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = +2
Query: 80 PLVSVYSEKSET-VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 256
PLVSV+S T V PLP VF+ PIRPD+V+ VH +++KN RQ + V+ +AG Q S
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHS 64
Query: 257 AESWGTGRAVARIPRVRGGGTHR 325
AESWGTGRAVARIPRV G GTHR
Sbjct: 65 AESWGTGRAVARIPRVSGSGTHR 87
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 103 bits (248), Expect = 6e-22
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 244
++ ARP+VSV+ T ++ PLP VF +P+R DLV V +MSKN RQ Y VS +AG
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAG 60
Query: 245 HQTSAESWGTGRAVARIPRVRGGGTHR 325
HQ SAESWGTGRAVARIPRV GT R
Sbjct: 61 HQHSAESWGTGRAVARIPRVSASGTSR 87
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 103 bits (247), Expect = 8e-22
Identities = 51/83 (61%), Positives = 61/83 (73%)
Frame = +2
Query: 77 RPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 256
RP VSV++ GA +P VF AP+R DLV VH +MSKN RQ Y VSK +G+QTS
Sbjct: 4 RPEVSVHNATDGERVGATL-MPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTS 62
Query: 257 AESWGTGRAVARIPRVRGGGTHR 325
A SWGTGRA+AR+PRV+GGGTHR
Sbjct: 63 ARSWGTGRAMARVPRVKGGGTHR 85
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 102 bits (245), Expect = 1e-21
Identities = 49/87 (56%), Positives = 61/87 (70%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 244
++ RPL +VY + V G + +P VF+ PIR DL+ + +MSKN R PY V AG
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAG 59
Query: 245 HQTSAESWGTGRAVARIPRVRGGGTHR 325
++TSAESWGTGRAVARIPRV GGGTHR
Sbjct: 60 YETSAESWGTGRAVARIPRVPGGGTHR 86
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 86.6 bits (205), Expect = 9e-17
Identities = 44/84 (52%), Positives = 57/84 (67%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 253
+RP V++Y + + LP VF APIR D+V+ V+ + SKN+RQP VS +AG Q
Sbjct: 3 SRPFVTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQH 62
Query: 254 SAESWGTGRAVARIPRVRGGGTHR 325
SA SWGTGRAVARIPR+ G G+ R
Sbjct: 63 SAISWGTGRAVARIPRISGSGSGR 86
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 85.8 bits (203), Expect = 2e-16
Identities = 43/80 (53%), Positives = 51/80 (63%)
Frame = +2
Query: 86 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 265
++ Y TV+ LP VF PIR DLV + +RQPY VSK AG Q SAES
Sbjct: 5 INCYEADGVTVKKTLD-LPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAES 63
Query: 266 WGTGRAVARIPRVRGGGTHR 325
WGTGRA+AR+PRV+GGGT R
Sbjct: 64 WGTGRAIARVPRVKGGGTRR 83
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 84.2 bits (199), Expect = 5e-16
Identities = 41/81 (50%), Positives = 55/81 (67%)
Frame = +2
Query: 83 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 262
L +VY+ + A P + +PIRPD+V+ VH++++KN RQP+ AGHQ SAE
Sbjct: 7 LTTVYNTDGKARDTTAVPSVIRY-SPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSAE 65
Query: 263 SWGTGRAVARIPRVRGGGTHR 325
SWGTGRAVAR+PR+ G GT R
Sbjct: 66 SWGTGRAVARVPRISGSGTSR 86
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 81.4 bits (192), Expect = 4e-15
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = +2
Query: 137 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 316
+P VF + IR D+V VH +M KN RQ Y VS AG TSA SWGTGRAV+R+PRV G G
Sbjct: 19 IPKVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWGTGRAVSRVPRVPGSG 78
Query: 317 THR 325
THR
Sbjct: 79 THR 81
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 79.0 bits (186), Expect = 2e-14
Identities = 39/78 (50%), Positives = 47/78 (60%)
Frame = +2
Query: 80 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 259
P V V+ V A P P VF P+RPD++N VH + K R PY VS+ AG Q +A
Sbjct: 3 PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60
Query: 260 ESWGTGRAVARIPRVRGG 313
SWG GRAVAR+PR GG
Sbjct: 61 HSWGPGRAVARLPRKHGG 78
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 74.5 bits (175), Expect = 4e-13
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2
Query: 170 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 316
D+VN VH ++ KN QPY VS+ AG+QTSAESWGTGRA +PRVRGGG
Sbjct: 25 DVVNFVHSNLHKNDSQPYAVSESAGYQTSAESWGTGRARGPMPRVRGGG 73
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 73.7 bits (173), Expect = 7e-13
Identities = 35/85 (41%), Positives = 58/85 (68%)
Frame = +2
Query: 71 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 250
++R V+V +++ + + + LP VF PIR ++V +V+V+++KN++QP+ AG +
Sbjct: 1 MSRQTVNVLTQEGQ--KASTIELPKVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKK 58
Query: 251 TSAESWGTGRAVARIPRVRGGGTHR 325
SA SWGTGRA A +PRV G G++R
Sbjct: 59 VSAISWGTGRAKACVPRVNGSGSNR 83
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 66.9 bits (156), Expect = 8e-11
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +2
Query: 203 KNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 325
++++ V +AGHQTSAESWGTGRAVARIPRV GGGTHR
Sbjct: 22 ESTKDTLTVPNKAGHQTSAESWGTGRAVARIPRVSGGGTHR 62
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 66.5 bits (155), Expect = 1e-10
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2
Query: 80 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSA 259
P+ ++ E+ +TV+ LP F+ P+R DL+ ++ N RQPY AG +TSA
Sbjct: 4 PVFNLEGEEVDTVE-----LPSFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSA 58
Query: 260 ESWGTGRAVARIPRVRG 310
ESWG G VA +PRV+G
Sbjct: 59 ESWGAGHGVAMVPRVKG 75
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 56.4 bits (130), Expect = 1e-07
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +2
Query: 86 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 265
++VYS K + + LP +F+ RPD++ +SM QP+ AG +T+AES
Sbjct: 4 INVYSLKGDITEEIE--LPEIFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTAES 61
Query: 266 WGTGRAVARIPRVRG 310
+G+GR A +PRV+G
Sbjct: 62 FGSGRGAAMVPRVKG 76
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 54.0 bits (124), Expect = 6e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +2
Query: 137 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 316
LP +F P+R DL+ V ++ +S QP AG +TSAES+G +AR+PRV+ G
Sbjct: 25 LPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKNSG 84
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 52.8 bits (121), Expect = 1e-06
Identities = 29/76 (38%), Positives = 40/76 (52%)
Frame = +2
Query: 83 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE 262
+V VY E+ LP +F+ P+R DL+ +S QP AG +TSA
Sbjct: 15 IVPVYDERGGEKDSVV--LPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAV 72
Query: 263 SWGTGRAVARIPRVRG 310
S G GR VAR+PR++G
Sbjct: 73 SLGVGRGVARVPRIKG 88
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 50.4 bits (115), Expect = 7e-06
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +2
Query: 140 PFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 310
P F PIRPDL+ ++S QP V + AG + S ES+G G +ARIPR +G
Sbjct: 45 PLHFLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKG 101
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 48.4 bits (110), Expect = 3e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +2
Query: 137 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 310
LP VF+ P+R DL+ + N +Q Y + AG +T AES+G+GR A +P+ G
Sbjct: 18 LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKQDG 75
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +2
Query: 137 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGG 313
LP VF RPD++ +++ + RQPY + +G S E+WG G AR+PR + G
Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG 76
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 45.6 bits (103), Expect = 2e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +2
Query: 239 AGHQTSAESWGTGRAVARIPRVRGGGTHR 325
+G+Q SA+SWG GR +ARIPR++G GT +
Sbjct: 59 SGNQVSAKSWGPGRGLARIPRIKGSGTRK 87
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 42.7 bits (96), Expect = 0.002
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +2
Query: 110 ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK-------EAGHQTSAESW 268
E G A LP VF IR DL+ ++ N RQ Y + +AG + S E W
Sbjct: 41 EAKNGKAVTLPDVFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHSVEWW 100
Query: 269 GTGRAVARIPRVRGGGT 319
G GR V+RI R G T
Sbjct: 101 GKGRGVSRIMRKAGQRT 117
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 42.7 bits (96), Expect = 0.002
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 119 QGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWG--TGRAVAR 292
+G LP VF P R DL+ + + + QP AG SA+S TG AR
Sbjct: 12 KGKEITLPPVFGTPYRRDLIKKAYTILDTHHFQPKGTHPTAGMDVSADSLNPPTGHGQAR 71
Query: 293 IPRVRGGGTHR 325
I R++GGG R
Sbjct: 72 IARMKGGGGRR 82
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 42.7 bits (96), Expect = 0.002
Identities = 25/76 (32%), Positives = 40/76 (52%)
Frame = +2
Query: 86 VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 265
V +YS E ++G LP VF +R D++ ++S + RQPY S AG + +
Sbjct: 5 VPIYSVSGE-MKGEID-LPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHT 62
Query: 266 WGTGRAVARIPRVRGG 313
G ++R+PR+ GG
Sbjct: 63 TRPGLGISRMPRIAGG 78
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 35.9 bits (79), Expect = 0.17
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 122 GAAKPLPFVFKAPIRPDLVNDVHVSMSKN 208
GA+ +P VF +PIR D+VN VH ++KN
Sbjct: 15 GASCAMPEVFLSPIRADIVNAVHTGLAKN 43
>UniRef50_Q7QNZ3 Cluster: GLP_149_9791_7437; n=2; Giardia lamblia
ATCC 50803|Rep: GLP_149_9791_7437 - Giardia lamblia ATCC
50803
Length = 784
Score = 33.1 bits (72), Expect = 1.2
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 68 SVARPLVSVYSEKS--ETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 241
SVA P VYS+++ T +P P + + P ++ V + + + S+ PY +S+ +
Sbjct: 350 SVASP--PVYSDRAPHSTDFQRLRPAPLLPQTPSSDSNISLVTLPLGQESKDPYSLSRTS 407
Query: 242 GHQTSAESWGTGRAVARIPR 301
Q SA + R A+ PR
Sbjct: 408 LSQNSATTTNEFRVSAKTPR 427
>UniRef50_Q550Q3 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 728
Score = 32.7 bits (71), Expect = 1.6
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -2
Query: 319 STTTTDTRNSGDSTSGTP*FGTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTY 161
ST +T T +S S++ TP F + L S+ H V +L V++ID V +
Sbjct: 580 STLSTSTSSSSSSSNSTPTFKSSLFVSIRGHRVLFLHLLTMAIVSLIDTVYAF 632
>UniRef50_UPI0000F200AE Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 1756
Score = 32.3 bits (70), Expect = 2.1
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPD---LVNDVHVSMSKNSRQPYCVSKEAG 244
ARP ++ Y + G ++PLP AP +P ++D+ + P+ ++ +G
Sbjct: 475 ARPKITSYPQNRRPAGGLSRPLPSPGAAPSKPHHILTISDLEDTRRPRRHSPH--TQNSG 532
Query: 245 HQTSAESWGTGRAVARIPRVRGGGTH 322
++ S G IP R GG+H
Sbjct: 533 TRSHMTSPTLGSPAGPIPS-RAGGSH 557
>UniRef50_A2X658 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 411
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 85 SVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 234
SVG + RDGAG + PP + A + Q VQELEA L +E+
Sbjct: 211 SVGEDEETRDGAGHDEPPPAPAEPASEAALAQ-AQLAQVQELEAKLQQER 259
>UniRef50_A4CKW9 Cluster: Putative uncharacterized protein; n=1;
Robiginitalea biformata HTCC2501|Rep: Putative
uncharacterized protein - Robiginitalea biformata
HTCC2501
Length = 481
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 309 PRTRGIRATARPVPHDSALVW*PASLLT-Q*GCLEFLDIET 190
P + +RATAR A VW P LL Q GC+E +DIET
Sbjct: 21 PLPKLLRATARVPKLLRAAVWLPVLLLLPQLGCVEEVDIET 61
>UniRef50_Q9VYL3 Cluster: CG32654-PC; n=4; Drosophila
melanogaster|Rep: CG32654-PC - Drosophila melanogaster
(Fruit fly)
Length = 2528
Score = 31.5 bits (68), Expect = 3.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 64 SIGSPTFSVGVFRKERDGAGCSQAPPVRVQG--AHTSGPG 177
++GSP ++VG G G S APP V AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326
>UniRef50_Q44233 Cluster: Beta-galactosidase; n=1; Arthrobacter
sp.|Rep: Beta-galactosidase - Arthrobacter sp
Length = 637
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 203 KNSRQPYCVSKEAGHQTSAE--SWGTGRAVARIPRVRGGGTHR 325
+NS +P+C + E + + SW +++ R R RGG THR
Sbjct: 388 RNSTRPWCRTPEPTREYGVKLLSWAQAQSLVRGSRRRGGITHR 430
>UniRef50_Q1GW38 Cluster: Putative uncharacterized protein; n=1;
Sphingopyxis alaskensis|Rep: Putative uncharacterized
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 180
Score = 31.1 bits (67), Expect = 4.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 62 SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY 223
++S P+ +Y E T+QG +P P+ + R L DV N PY
Sbjct: 19 TISADVPMAKIYQEPRSTLQGGHRPQPWYLEFEARRPLGRDVFTGWITND-DPY 71
>UniRef50_Q1GFT9 Cluster: Cytochrome c class I; n=2;
Rhodobacteraceae|Rep: Cytochrome c class I -
Silicibacter sp. (strain TM1040)
Length = 143
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -1
Query: 323 YEYHHHGHAEFGRQHVRYPMIRHW-FGDQPP 234
YE HHG F R HW FGD PP
Sbjct: 87 YEPSHHGDESFQRAVANGVRAHHWHFGDMPP 117
>UniRef50_Q1GF71 Cluster: Transcriptional regulator TetR family;
n=1; Silicibacter sp. TM1040|Rep: Transcriptional
regulator TetR family - Silicibacter sp. (strain TM1040)
Length = 190
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 185 HH*PG--PDVWAP*TRTGGAWLHPAPSRSFLNTPTLKVG 75
HH PG P++ A TR GAW+ RSF T + G
Sbjct: 44 HHFPGGKPELAAAATRWAGAWIESLVQRSFEGAETFEEG 82
>UniRef50_A6G2S2 Cluster: Peptidase S1 and S6, chymotrypsin/Hap;
n=1; Plesiocystis pacifica SIR-1|Rep: Peptidase S1 and
S6, chymotrypsin/Hap - Plesiocystis pacifica SIR-1
Length = 366
Score = 30.7 bits (66), Expect = 6.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 253 GLVTSLLAHAVGLPRVL-GHRNVNIIDQVRTYGRLEHEREGLG 128
G+ T++ GL + + ID+VRT+GR+ H R G+G
Sbjct: 238 GITTAVRQDGQGLAFAIPSPMALRFIDEVRTHGRMRHTRLGIG 280
>UniRef50_A3UKR0 Cluster: Probable C-5 cytosine-specific DNA
methylase; n=1; Oceanicaulis alexandrii HTCC2633|Rep:
Probable C-5 cytosine-specific DNA methylase -
Oceanicaulis alexandrii HTCC2633
Length = 681
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 122 GAAKPLPFVFKAPIRPDLVNDVHVS----MSKNSRQPYCVSKEAGHQTSAESWGTGRAVA 289
G + F++K P +PD + HV+ +N+ +P+ + E H +A G A
Sbjct: 427 GEEDNVTFLYKHPAQPDALQVAHVAPHIMTMRNAGKPFTAANEPTHTVTAGGAGLSLVAA 486
Query: 290 RIPRVRGG 313
+ + GG
Sbjct: 487 FMAQHNGG 494
>UniRef50_A3C3B6 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 150
Score = 30.7 bits (66), Expect = 6.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 257 AESWGTGRAVARIPRVRGGGTHR 325
A+SW TGRA A + R R GG R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRR 58
>UniRef50_A2ZFD2 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 248
Score = 30.7 bits (66), Expect = 6.5
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 103 KERDGAGCSQAPPVRVQGAHTSGPGQ*CSRFYVQELEAALLREQGGWS-PNQCRIMGYRT 279
KE G G S + PV G H P C F + ++AA R+ G P QC ++
Sbjct: 166 KEAGGGGSSSSLPVGTLGLH-GAPPLLCGEF-LSWIDAA-TRQWGKLRLPKQCHLVPGSP 222
Query: 280 CCRPNSACPWWW 315
+ A WW
Sbjct: 223 SAKSGEAASGWW 234
>UniRef50_A0BK90 Cluster: Chromosome undetermined scaffold_111, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_111, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 1552
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 58 NESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ 180
NES+G T S+ K G + PP +++ +H + PGQ
Sbjct: 1425 NESLGEATMSLKPIIKRLSRDGKYEMPPTKIKLSHPNYPGQ 1465
>UniRef50_Q4RQE1 Cluster: Chromosome 17 SCAF15006, whole genome
shotgun sequence; n=4; Euteleostomi|Rep: Chromosome 17
SCAF15006, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 750
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 100 RKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYRT 279
+++R+ A C +A + +QG+ +G Q S F ++E+ A L + SP+ RI G
Sbjct: 319 KQQREAASCLRALGLSIQGSSAAGSQQQLSTF-LEEITPACLLD----SPSTSRIYGGPV 373
Query: 280 C 282
C
Sbjct: 374 C 374
>UniRef50_Q5QVR0 Cluster: Helicase, ATP-dependent; n=1; Idiomarina
loihiensis|Rep: Helicase, ATP-dependent - Idiomarina
loihiensis
Length = 820
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +1
Query: 223 LREQGGWSPNQ--CRIMGYRTCCRPNSACPWWW 315
L++ W P + C Y R NSACP WW
Sbjct: 687 LKQLQQWDPYEALCYFFDYSELQRLNSACPEWW 719
>UniRef50_A3JDF2 Cluster: N-carbamoyl-L-amino acid amidohydrolase;
n=2; Gammaproteobacteria|Rep: N-carbamoyl-L-amino acid
amidohydrolase - Marinobacter sp. ELB17
Length = 420
Score = 30.3 bits (65), Expect = 8.6
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +2
Query: 32 EV*LR*SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPI-RPD--LVNDVHVSMS 202
+V +R + E +L + + + + +G + V+ P+ R D LV D+ +
Sbjct: 293 QVDVRHTKEAALQTLDDNLRAHVQAAAEREGVNANISVVWHMPVTRFDEALVKDLSSATE 352
Query: 203 KNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 322
P+C+ AGH S+ T A+ IP RGG +H
Sbjct: 353 ALGHVPFCMMSGAGHDAVNVSYVTPTAMLFIP-CRGGISH 391
>UniRef50_Q75LF8 Cluster: Putative uncharacterized protein
OSJNBb0079B16.11; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OSJNBb0079B16.11 - Oryza sativa subsp. japonica (Rice)
Length = 228
Score = 30.3 bits (65), Expect = 8.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 143 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 319
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 320 H 322
+
Sbjct: 168 N 168
>UniRef50_Q0CQZ3 Cluster: Putative uncharacterized protein; n=1;
Aspergillus terreus NIH2624|Rep: Putative
uncharacterized protein - Aspergillus terreus (strain
NIH 2624)
Length = 451
Score = 30.3 bits (65), Expect = 8.6
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = -3
Query: 309 PRTRGIRATARPVPHD-SALVW*PASLLTQ*GCLEFLDIET*TSLTRSGRMGALNTNGRG 133
PR RG A + P+PHD + V PA+ + +F+ + + TR R G+ N+ G
Sbjct: 23 PRDRGSMAGSLPIPHDANNTVEIPATRSSISDAAQFMHNLSISPSTRD-RRGSRNSFGTS 81
Query: 132 LAAPCT--VSLFSEYTDTKGRATDRLIS 55
L P + VS S G + D L S
Sbjct: 82 LPIPRSPRVSRLSSVVTAGGTSRDILAS 109
>UniRef50_O83133 Cluster: TPR repeat-containing protein TP_0095;
n=1; Treponema pallidum|Rep: TPR repeat-containing
protein TP_0095 - Treponema pallidum
Length = 648
Score = 30.3 bits (65), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 291 RATARPVPHDSALVW*PASLLTQ*GCL 211
RA + PHD AL W A++L + GCL
Sbjct: 243 RAASAFAPHDPALKWYEAAMLVEMGCL 269
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,635,275
Number of Sequences: 1657284
Number of extensions: 7408047
Number of successful extensions: 22115
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 21329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22080
length of database: 575,637,011
effective HSP length: 85
effective length of database: 434,767,871
effective search space used: 9999661033
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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