Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0238
         (326 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   1.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   1.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   1.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   1.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   3.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   3.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   3.3  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    20   7.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    20   7.6  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    20   7.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    20   7.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 224  CVSKEAGHQTSAESW 268
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 157  AHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 276
            A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1376 AQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 223 LREQGGWSPNQCRIMGYRTCCRPNS 297
           L E+    PN CRI G ++  RP++
Sbjct: 241 LLEEDNQKPNVCRICG-KSYARPST 264


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 157  AHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 276
            A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1376 AQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 139 PVRVQGAHTSGPGQ*CSRFYVQELEAAL 222
           PVR+ G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 67  IGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 174
           +G P +  G   K  + +  S  PP+ + GA  +GP
Sbjct: 287 LGIPAY--GRAWKMDEDSSISGVPPLSIDGALEAGP 320


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 271 YRTCCRPNSACPWWW 315
           YR C RP      WW
Sbjct: 256 YRYCYRPYPVYNQWW 270


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 218 PYCVSKEAGHQTSAESWGTGRAVARIP 298
           PY  +    HQ +A ++G   + + +P
Sbjct: 3   PYVSAAHHHHQAAAAAFGAAASGSMVP 29


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 218 PYCVSKEAGHQTSAESWGTGRAVARIP 298
           PY  +    HQ +A ++G   + + +P
Sbjct: 62  PYVSAAHHHHQAAAAAFGAAASGSMVP 88


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 218 PYCVSKEAGHQTSAESWGTGRAVARIP 298
           PY  +    HQ +A ++G   + + +P
Sbjct: 3   PYVSAAHHHHQAAAAAFGAAASGSMVP 29


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 218 PYCVSKEAGHQTSAESWGTGRAVARIP 298
           PY  +    HQ +A ++G   + + +P
Sbjct: 62  PYVSAAHHHHQAAAAAFGAAASGSMVP 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,285
Number of Sequences: 336
Number of extensions: 1719
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)