Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0238
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 129 1e-31
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 128 2e-31
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 1.3
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 1.3
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 1.3
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 24 5.1
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 24 5.1
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 24 6.7
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 6.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 24 6.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 24 6.7
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 24 6.7
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 129 bits (311), Expect = 1e-31
Identities = 60/87 (68%), Positives = 70/87 (80%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 244
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 245 HQTSAESWGTGRAVARIPRVRGGGTHR 325
HQTSAESWGTGRA+ARIPRV GGGTHR
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHR 86
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 128 bits (309), Expect = 2e-31
Identities = 59/87 (67%), Positives = 70/87 (80%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 244
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 245 HQTSAESWGTGRAVARIPRVRGGGTHR 325
HQTSAESWGTGRA+ARIPRV GGGTHR
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHR 86
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 64 SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 174
SI SP+ SVG + D + S + P+ + G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 126 APCTVSLFSEYTDTKGRATDRLISLL 49
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 139 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 234
PV VQG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +2
Query: 116 VQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTS 256
+QG+ P F + P+ + H ++ PY K+ H+ S
Sbjct: 709 LQGSDGPRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDLDHKLS 755
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 24.2 bits (50), Expect = 5.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 326 TYEYHHHGHAEFGRQH 279
T++Y HH H G H
Sbjct: 19 THDYDHHNHDHHGHDH 34
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 183 SLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRL 61
SL+ S R+GAL++ + + C + T +G + DR+
Sbjct: 325 SLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLRGFSEDRI 365
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 53 SEMSLSVARPLVSVYSE 103
SEMSL++A P+ + Y+E
Sbjct: 96 SEMSLTIALPISAAYTE 112
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 101 LNTPTLKVGLPIDSFRYFSEAIPPKYTL 18
+N PT+ G P S +IPP + +
Sbjct: 235 MNNPTIPKGTPSTSIEGAKTSIPPSHAM 262
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 23.8 bits (49), Expect = 6.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -1
Query: 320 EYHHHGHAEFGR 285
E+HHHGH F +
Sbjct: 5 EHHHHGHNGFSK 16
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 115 GAGCSQAPPVRVQGAHTSGPGQ*CSRFYVQELE 213
G G S PP ++G S + RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,800
Number of Sequences: 5004
Number of extensions: 26040
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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