Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0238
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 109 7e-25
07_01_0578 + 4295386-4296489,4297394-4297507 107 3e-24
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 34 0.030
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.053
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 31 0.16
10_02_0199 + 6668902-6669293,6669825-6669882 31 0.28
03_05_0366 - 23505755-23506441 30 0.37
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 0.86
08_02_1285 - 25881091-25881798 28 2.0
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 2.0
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 2.6
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 2.6
03_01_0147 - 1170481-1171260,1171332-1171511 27 2.6
09_06_0153 - 21243108-21245660 27 3.5
04_04_1394 - 33213852-33214406,33214487-33214678,33214777-332148... 27 3.5
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 3.5
11_01_0074 + 582210-582434,582521-582712,582785-582950,584013-58... 27 4.6
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 27 4.6
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 27 4.6
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 27 4.6
09_02_0384 - 8294914-8297817 26 6.1
07_03_1169 + 24501594-24502826 26 6.1
06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709 26 6.1
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 26 6.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 26 8.0
09_04_0541 + 18437075-18440062 26 8.0
05_04_0220 - 19167485-19169290 26 8.0
05_01_0262 + 2013396-2013572,2013921-2014712 26 8.0
03_03_0084 + 14337998-14338255,14338372-14339133 26 8.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 109 bits (261), Expect = 7e-25
Identities = 54/87 (62%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +2
Query: 68 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 244
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 245 HQTSAESWGTGRAVARIPRVRGGGTHR 325
HQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHR 89
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 107 bits (256), Expect = 3e-24
Identities = 53/85 (62%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Frame = +2
Query: 77 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 250
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 251 TSAESWGTGRAVARIPRVRGGGTHR 325
TSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHR 90
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 33.9 bits (74), Expect = 0.030
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
ASL N I +PTF +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.053
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 31.5 bits (68), Expect = 0.16
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
ASL N I +PT +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 257 AESWGTGRAVARIPRVRGGGTHR 325
A+SW TGRA A + R R GG R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRR 58
>03_05_0366 - 23505755-23506441
Length = 228
Score = 30.3 bits (65), Expect = 0.37
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 143 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 319
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 320 H 322
+
Sbjct: 168 N 168
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.1 bits (62), Expect = 0.86
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>08_02_1285 - 25881091-25881798
Length = 235
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 103 KERDGAGCSQAPPVRVQGAHTSGPG 177
+E DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 326 TYEYHH-HGHAEFGRQHVRYPMIRH 255
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 152 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 265
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 146 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 316
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 317 T 319
T
Sbjct: 215 T 215
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 34 GIASLK*R-NESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 126 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 4
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>04_04_1394 -
33213852-33214406,33214487-33214678,33214777-33214826,
33215002-33215218
Length = 337
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 31 GGIASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
G ASL N + PT + K G + + + + GAHT G + C+ F
Sbjct: 168 GTTASLDAANNDLPPPTSDLADLIKSFSDKGLTASDMIALSGAHTIGQAR-CTNF 221
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 315 PPPRTRGIRATARPVPHDSA 256
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>11_01_0074 +
582210-582434,582521-582712,582785-582950,584013-584404
Length = 324
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
ASL N +I PT + G SQ V + G+HT G + C+ F
Sbjct: 157 ASLSGANNNIPPPTSGLANLTSLFAAQGLSQKDMVALSGSHTIGQAR-CTNF 207
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 167 PDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIP 298
PD++ + H+ + KN R +A +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 304 DTRNSGDSTSGTP*FGTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 170
+ R+SG T F L + H +G+ VLG +N+ ++DQ+
Sbjct: 85 EARDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 256 TGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TYGRLEHEREGLGCTLHRL 110
TG+ +L+ + VG+P+VL ++ I Q+ G +E +RE G L+ L
Sbjct: 205 TGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYGPALYTL 250
>09_02_0384 - 8294914-8297817
Length = 967
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 83 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSK 205
LV +Y S V PLP + + PIR LV +H+++ K
Sbjct: 116 LVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVG-MHLNVMK 155
>07_03_1169 + 24501594-24502826
Length = 410
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 85 SVGVFRKERDGAGCSQAPPVR 147
++G RK DG G Q PP R
Sbjct: 13 AIGAARKRHDGGGGEQQPPFR 33
>06_03_0807 - 24789843-24789859,24791536-24791613,24793589-24793709
Length = 71
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 213 LEFLDIET*TSLTRSGRMGALNTNGRGLAAPCTVSLFSE 97
LE L E S+ R GR+ + G+G PC+ ++ E
Sbjct: 28 LEALQEEESVSVQRRGRVENSSREGKGRVMPCSAYVWGE 66
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = -1
Query: 323 YEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 234
+ +HHHGH + + H G PP
Sbjct: 37 HHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -3
Query: 318 VPPPRTRGIRATARP---VPHDSALVW 247
+P PR R I A ARP VP S L W
Sbjct: 35 LPSPRRRPITAAARPTWAVPRRSRLEW 61
>09_04_0541 + 18437075-18440062
Length = 995
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 143 TGGAWLHPAP-SRSFLNTPTLKVGLPIDSFRYFSEAI 36
T G+WL PAP S + L T K+ +S + + E++
Sbjct: 714 TAGSWLAPAPMSSTLLATMASKLPTKANSIQLWGESL 750
>05_04_0220 - 19167485-19169290
Length = 601
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 171 SGRMGALNTNGRGLAAPCTVSLFS 100
+G +GAL +NG +A C+ SLF+
Sbjct: 328 AGPLGALESNGWVYSAHCSFSLFT 351
>05_01_0262 + 2013396-2013572,2013921-2014712
Length = 322
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 61 ESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 195
+++ +PTFS+ + G + V + GAHT G CS F
Sbjct: 150 DNVPAPTFSLAQLVASFERKGLTADDMVTLSGAHTIGRSH-CSSF 193
>03_03_0084 + 14337998-14338255,14338372-14339133
Length = 339
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 76 PTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRFYVQELEAA 219
PTF++G G S V + GAHT G CS F L A
Sbjct: 183 PTFNLGQLVANFAAKGLSVEDMVVLSGAHTIGLSH-CSSFVSDRLAVA 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,469
Number of Sequences: 37544
Number of extensions: 227972
Number of successful extensions: 671
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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