Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0238
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               126   6e-30
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)                  29   0.68 
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   0.89 
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   1.6  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   1.6  
SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)                   27   3.6  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   4.8  
SB_33182| Best HMM Match : rve (HMM E-Value=0.00043)                   24   5.3  
SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   5.4  
SB_46730| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   26   6.3  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          26   8.3  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  126 bits (303), Expect = 6e-30
 Identities = 59/84 (70%), Positives = 69/84 (82%)
 Frame = +2

Query: 74  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 253
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 254 SAESWGTGRAVARIPRVRGGGTHR 325
           SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHR 83


>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
          Length = 532

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 199 VQELEAALLREQGGWSPNQCRIMGYRTCCRPNSACPWWW 315
           + E  A L+   G   P++  I+ +R CCR N  C W+W
Sbjct: 221 ITEAAAVLIVVNGTGVPDRL-IVSFRGCCRVN--CNWYW 256


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 170  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 295
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 141  GRGLAAPCTVSLFSEYTDTKGRATDRLI 58
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 164 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 286
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 323 YEYHHHGHAEFGRQHVRYPMIRHWF 249
           Y Y+ H H  + R H  YP  RH++
Sbjct: 30  YCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)
          Length = 1147

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 249 KPVPNHGVPDVLSPEFRVSVVVVLI 323
           K  P HG+P   S +F ++++VVL+
Sbjct: 443 KLFPKHGLPPPTSKDFDITLIVVLL 467


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 198 CPRTRGSPTA*ARRLVTKPVPNHGVPDV--LSPEFRVS 305
           C ++ G+ T    R+ T P P HG  D   L P+  ++
Sbjct: 512 CSKSCGNGTTNRTRMCTNPAPRHGGEDCEHLGPDIEIT 549


>SB_33182| Best HMM Match : rve (HMM E-Value=0.00043)
          Length = 801

 Score = 23.8 bits (49), Expect(2) = 5.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 131 WLHPAPSRSFLNTPTLKVGLPIDSFRYFSEAIPPKYTLI 15
           W+   P   +  TP      P  ++ +FSE IPP  T I
Sbjct: 488 WVSSQPYGGYTQTPP-----PPTTYAHFSEQIPPLSTSI 521



 Score = 21.0 bits (42), Expect(2) = 5.3
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -1

Query: 302 HAEFGRQHVRYPMIRHWFGDQP 237
           HA+F +       +R W   QP
Sbjct: 472 HAKFPKGSASIDRVRRWVSSQP 493


>SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 23.8 bits (49), Expect(2) = 5.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 131 WLHPAPSRSFLNTPTLKVGLPIDSFRYFSEAIPPKYTLI 15
           W+   P   +  TP      P  ++ +FSE IPP  T I
Sbjct: 459 WVSSQPYGGYTQTPP-----PPTTYAHFSEQIPPLSTSI 492



 Score = 21.0 bits (42), Expect(2) = 5.4
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -1

Query: 302 HAEFGRQHVRYPMIRHWFGDQP 237
           HA+F +       +R W   QP
Sbjct: 443 HAKFPKGSASIDRVRRWVSSQP 464


>SB_46730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 94  VFRKERDGAGCSQAPPVRVQGAHTS 168
           +FRKE  G  C Q P V   G + S
Sbjct: 217 IFRKEESGRKCQQIPEVCTMGQNFS 241


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 50  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 223
           S +M L   R  +  Y+E    ++   + LP V  AP+  D+V +V  S  K S + Y  
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531

Query: 224 --CVSKEA 241
             C S EA
Sbjct: 532 ENCPSVEA 539


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 323 YEYHHHGHAEFGRQHVRY 270
           + +HHH H E+ R+H RY
Sbjct: 337 HRHHHHHHHEYNRRH-RY 353


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 323 YEYHHHGHAEFGRQHVRYPMIRHWFG 246
           Y Y+++ +  + RQ VRYP+  H+ G
Sbjct: 528 YYYYYYYYYYYPRQVVRYPVNGHFHG 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,721
Number of Sequences: 59808
Number of extensions: 228885
Number of successful extensions: 568
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)