Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0238
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   108   8e-25
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    27   2.4  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      27   2.4  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   3.2  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   4.2  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   4.2  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    26   5.6  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    26   5.6  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    26   5.6  
Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U55373-13|AAC25891.1|  151|Caenorhabditis elegans Hypothetical p...    25   9.7  
AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.     25   9.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  108 bits (260), Expect = 8e-25
 Identities = 53/84 (63%), Positives = 63/84 (75%)
 Frame = +2

Query: 74  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 253
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 254 SAESWGTGRAVARIPRVRGGGTHR 325
           SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHR 85


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 322 MSTTTTDTRNSGDSTSGTP*FGTGLVTSLLAH 227
           +STTTT T + G  ++ TP  G+G  T  + H
Sbjct: 766 LSTTTTPTHSQGAPSTSTPIGGSGNSTLSVLH 797


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 322 MSTTTTDTRNSGDSTSGTP*FGTGLVTSLLAH 227
           +STTTT T + G  ++ TP  G+G  T  + H
Sbjct: 766 LSTTTTPTHSQGAPSTSTPIGGSGNSTLSVLH 797


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +2

Query: 59  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 232
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 165 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 52
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 165 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 52
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 174 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 61
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 174 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 61
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +2

Query: 77  RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 250
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 251 TSAESWGTGRAVARIPRVRGGGTHR 325
             + S      V      RGGG +R
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNR 103


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +2

Query: 77  RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 250
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 251 TSAESWGTGRAVARIPRVRGGGTHR 325
             + S      V      RGGG +R
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNR 103


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +2

Query: 77  RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 250
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 251 TSAESWGTGRAVARIPRVRGGGTHR 325
             + S      V      RGGG +R
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNR 103


>Z73424-2|CAA97780.1|  287|Caenorhabditis elegans Hypothetical
           protein C44B9.3 protein.
          Length = 287

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 319 STTTTDTRNSGDSTSGTP*FGTGLVTSLL 233
           +TTTT    +  ST+ +P FGT   TSLL
Sbjct: 146 TTTTTTVTPAPPSTTFSPFFGTSNNTSLL 174


>Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical
           protein F57B7.4 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 292 SGDSTSGTP*FGTGLVTSLLAHAVG 218
           +GDS+S     G GL + ++AH +G
Sbjct: 281 NGDSSSVVEDIGAGLTSLIMAHEIG 305


>U55373-13|AAC25891.1|  151|Caenorhabditis elegans Hypothetical
           protein F26F12.4 protein.
          Length = 151

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 202 QELEAALLREQGGWSPNQ 255
           +ELEAA  R  GG++P+Q
Sbjct: 120 EELEAAEFRNAGGYAPSQ 137


>AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 292 SGDSTSGTP*FGTGLVTSLLAHAVG 218
           +GDS+S     G GL + ++AH +G
Sbjct: 281 NGDSSSVVEDIGAGLTSLIMAHEIG 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,958,898
Number of Sequences: 27780
Number of extensions: 166632
Number of successful extensions: 463
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)